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NAME

       muse_exp_align  -  Create  a  coordinate  offset  table  to  be  used  to align exposures during exposure
       combination.

SYNOPSIS

       esorex muse_exp_align [OPTIONS] FILE.sof

DESCRIPTION

       Compute the coordinate offset for each input field-of-view image with respect to a reference. The created
       list of coordinate offsets can then be used in  muse_exp_combine  as  the  field  coordinate  offsets  to
       properly align the exposures during their combination.

OPTIONS

       --rsearch <str>
              Search  radius  (in  arcsec)  for  each  iteration  of  the  offset  computation.  (str;  default:
              ´30.,4.,2.,0.8´).  The  full  name  of  this  option  for  the  EsoRex   configuration   file   is
              muse.muse_exp_align.rsearch [default = 30.,4.,2.,0.8].

       --nbins <int>
              Number  of  bins  to  use for 2D histogram on the first iteration of the offset computation. (int;
              default:  60).  The  full  name  of  this  option   for   the   EsoRex   configuration   file   is
              muse.muse_exp_align.nbins [default = 60].

       --weight <bool>
              Use  weighting.  (bool;  default: True). The full name of this option for the EsoRex configuration
              file is muse.muse_exp_align.weight [default = True].

       --fwhm <float>
              FWHM in pixels of the convolution filter. (float; default: 5.0). The full name of this option  for
              the EsoRex configuration file is muse.muse_exp_align.fwhm [default = 5.0].

       --threshold <float>
              Initial  intensity  threshold  for  detecting point sources in sigma above background RMS. (float;
              default:  15.0).  The  full  name  of  this  option  for  the   EsoRex   configuration   file   is
              muse.muse_exp_align.threshold [default = 15.0].

       --step <float>
              Increment/decrement  of  the threshold value in subsequent iterations.  (float; default: 0.5). The
              full name of this option for the EsoRex configuration file is muse.muse_exp_align.step [default  =
              0.5].

       --iterations <int>
              Maximum  number of iterations used for detecting sources. (int; default: 100000). The full name of
              this option for  the  EsoRex  configuration  file  is  muse.muse_exp_align.iterations  [default  =
              100000].

       --srcmin <int>
              Minimum number of sources which must be found. (int; default: 5). The full name of this option for
              the EsoRex configuration file is muse.muse_exp_align.srcmin [default = 5].

       --srcmax <int>
              Maximum number of sources which may be found. (int; default: 80). The full name of this option for
              the EsoRex configuration file is muse.muse_exp_align.srcmax [default = 80].

       --roundmin <float>
              Lower  limit  of the allowed point-source roundness. (float; default: -1.0). The full name of this
              option for the EsoRex configuration file is muse.muse_exp_align.roundmin [default = -1.0].

       --roundmax <float>
              Upper limit of the allowed point-source roundness. (float; default: 1.0). The full  name  of  this
              option for the EsoRex configuration file is muse.muse_exp_align.roundmax [default = 1.0].

       --sharpmin <float>
              Lower  limit  of  the allowed point-source sharpness. (float; default: 0.2). The full name of this
              option for the EsoRex configuration file is muse.muse_exp_align.sharpmin [default = 0.2].

       --sharpmax <float>
              Upper limit of the allowed point-source sharpness. (float; default: 1.0). The full  name  of  this
              option for the EsoRex configuration file is muse.muse_exp_align.sharpmax [default = 1.0].

       Note  that  it  is  possible to create a configuration file containing these options, along with suitable
       default values. Please refer to the details provided by the 'esorex --help' command.

SEE ALSO

       The full documentation for the muse pipeline can be downloaded as a PDF file using the following URL:

              ftp://ftp.eso.org/pub/dfs/pipelines/muse/muse-pipeline-cookbook-2.2.0.pdf

       An   overview   over   the   existing   ESO   pipelines    can    be    found    on    the    web    page
       http://www.eso.org/sci/software/pipelines/.

       Basic documentation about the EsoRex program can be found at the esorex (1) man page.

       It   is   possible   to   call   the   pipelines   from   python   using  the  python-cpl  package.   See
       http://packages.python.org/python-cpl/index.html for further information.

       The  other  recipes  of  the  muse   pipeline   are   muse_ampl(7),   muse_astrometry(7),   muse_bias(7),
       muse_create_sky(7),  muse_dark(7),  muse_exp_combine(7), muse_flat(7), muse_geometry(7), muse_lingain(7),
       muse_lsf(7),  muse_qi_mask(7),   muse_scibasic(7),   muse_scipost(7),   muse_scipost_apply_astrometry(7),
       muse_scipost_calibrate_flux(7),      muse_scipost_combine_pixtables(7),      muse_scipost_correct_dar(7),
       muse_scipost_correct_rv(7),           muse_scipost_make_cube(7),            muse_scipost_subtract_sky(7),
       muse_scipost_subtract_sky_simple(7), muse_standard(7), muse_twilight(7), muse_wavecal(7)

VERSION

       muse_exp_align 2.2.0

AUTHOR

       Ralf Palsa <usd-help@eso.org>

BUG REPORTS

       Please  report  any  problems  to  usd-help@eso.org. Alternatively, you may send a report to the ESO User
       Support Department <usd-help@eso.org>.

LICENSE

       This file is part of the MUSE Instrument Pipeline Copyright (C) 2005, 2017 European Southern Observatory

       This program is free software; you can redistribute it and/or modify  it  under  the  terms  of  the  GNU
       General  Public License as published by the Free Software Foundation; either version 2 of the License, or
       (at your option) any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY  WARRANTY;  without  even
       the  implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public
       License for more details.

       You should have received a copy of the GNU General Public License along with this program; if not,  write
       to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02111-1307  USA

muse_exp_align                                        2.2.0                                    MUSE_EXP_ALIGN(7)