bionic (1) mia-3dlandmarks-transform.1.gz

NAME

       ('mia\-3dlandmarks\-transform',) - Transform 3D landmark positions.

SYNOPSIS

       mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

       mia-3dlandmarks-transform Transform the locations of the landmarks by means of a given 3D transformation.
       Note, landmark transformations do the inverse of an image transformation (in a manner of speaking),  i.e.
       given  a  transformation  V(x) in an image transformation the pixel intensity at x is set to the original
       intensity at V(x), while a landmark at x is moved to V(x).

OPTIONS

              -i --in-file=(input, required); io
                     input landmark set
                      For supported file types see PLUGINS:3dlandmarklist/io

              -o --out-file=(output, required); io
                     output landmark set
                      For supported file types see PLUGINS:3dlandmarklist/io

              -t --transformation=(input, required); io
                     transformation file
                      For supported file types see PLUGINS:3dtransform/io

   Help & Info
              -V --verbose=warning
                     verbosity of output, print  messages  of  given  level  and  higher  priorities.  Supported
                     priorities starting at lowest level are:

                        info ‐ Low level messages
                        trace ‐ Function call trace
                        fail ‐ Report test failures
                        warning ‐ Warnings
                        error ‐ Report errors
                        debug ‐ Debug output
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum  number  of  threads to use for processing,This number should be lower or equal to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 3dlandmarklist/io

       datapool  Virtual IO to and from the internal data pool

                     ('Recognized file extensions: ', '.@')

       lmx       IO plugin to load and store 3D landmark lists

                     ('Recognized file extensions: ', '.lmx')

PLUGINS: 3dtransform/io

       bbs       Binary (non-portable) serialized IO of 3D transformations

                     ('Recognized file extensions: ', '.bbs')

       datapool  Virtual IO to and from the internal data pool

                     ('Recognized file extensions: ', '.@')

       vista     Vista storage of 3D transformations

                     ('Recognized file extensions: ', '.v, .v3dt')

       xml       XML serialized IO of 3D transformations

                     ('Recognized file extensions: ', '.x3dt')

EXAMPLE

       Transform the landmarks given in input.lmx by applyning the transfromation stored in  trans.v  and  store
       the result in output.lmx

       mia-3dlandmarks-transform -i input.lmx -t trans.v  -o output.lmx

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with  ABSOLUTELY
       NO WARRANTY  and  you  may redistribute it under the terms of the GNU GENERAL PUBLIC  LICENSE  Version  3
       (or later). For more information run the program with the option '--copyright'.