Provided by: mia-tools_2.4.6-1_amd64 
NAME
('mia\-meshdistance\-to\-stackmask',) - Evaluate the distance between a binary shape given as reference
and a mesh.
SYNOPSIS
mia-meshdistance-to-stackmask -i <in-mesh> -r <ref-mask> -o <out-mesh> [options]
DESCRIPTION
mia-meshdistance-to-stackmask This program takes a binary masks and a triangular mesh as input and
evaluates the distance of the mesh vertices to the binary maskand stores the result in a new mesh.
OPTIONS
-i --in-mesh=(input, required); io
input mesh
For supported file types see PLUGINS:mesh/io
-r --ref-mask=(input, required); io
reference binary mask
For supported file types see PLUGINS:2dimage/io
-o --out-mesh=(output, required); io
output mesh
For supported file types see PLUGINS:mesh/io
Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities. Supported
priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors
--copyright
print copyright information
-h --help
print this help
-? --usage
print a short help
--version
print the version number and exit
Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower or equal to
the number of logical processor cores in the machine. (-1: automatic estimation).
PLUGINS: 2dimage/io
bmp BMP 2D-image input/output support. The plug-in supports reading and writing of binary images
and 8-bit gray scale images. read-only support is provided for 4-bit gray scale images. The
color table is ignored and the pixel values are taken as literal gray scale values.
('Recognized file extensions: ', '.BMP, .bmp')
Supported element types:
binary data, unsigned 8 bit
datapool Virtual IO to and from the internal data pool
('Recognized file extensions: ', '.@')
dicom 2D image io for DICOM
('Recognized file extensions: ', '.DCM, .dcm')
Supported element types:
signed 16 bit, unsigned 16 bit
exr a 2dimage io plugin for OpenEXR images
('Recognized file extensions: ', '.EXR, .exr')
Supported element types:
unsigned 32 bit, floating point 32 bit
jpg a 2dimage io plugin for jpeg gray scale images
('Recognized file extensions: ', '.JPEG, .JPG, .jpeg, .jpg')
Supported element types:
unsigned 8 bit
png a 2dimage io plugin for png images
('Recognized file extensions: ', '.PNG, .png')
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit
raw RAW 2D-image output support
('Recognized file extensions: ', '.RAW, .raw')
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
unsigned 32 bit, floating point 32 bit, floating point 64 bit
tif TIFF 2D-image input/output support
('Recognized file extensions: ', '.TIF, .TIFF, .tif, .tiff')
Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit
vista a 2dimage io plugin for vista images
('Recognized file extensions: ', '.-, .V, .VISTA, .v, .vista')
Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
unsigned 32 bit, floating point 32 bit, floating point 64 bit
PLUGINS: mesh/io
datapool Virtual IO to and from the internal data pool
('Recognized file extensions: ', '.@')
off plugin to load/store some Geomview OFF files. Supported is only the ASCII format 3D meshes with
normales and per-vertex RGB colors. Alpha values and texture coordinates, as well as per face
properties are ignored. Polygons are read and triangulated.
('Recognized file extensions: ', '.OFF, .off')
ply Ply triangle mesh input/output support
('Recognized file extensions: ', '.PLY, .ply')
stl STL mesh io plugin
('Recognized file extensions: ', '.STL, .stl')
vista Vista/Simbio triangle mesh input/output support
('Recognized file extensions: ', '.-, .V, .VMESH, .v, .vmesh')
vtk A subset of VTK mesh in-and output: Triangle meshes are written, and triangle meshes and
triangle strips are read. Additional per-vertex attributes are supported: 'normals', 'colors'
for three component colors, and 'scale' for a scalar value attached to each vertex. The data is
written by the vtkPolyDataWriter in binary format.
('Recognized file extensions: ', '.VTK, .VTKMESH, .vtk, .vtkmesh')
EXAMPLE
Evaluate the distance of the mask given in the images maskXXXX.png to the mesh given in mesh.v and save
the result to mesh-dist.v
mia-meshdistance-to-stackmask -i mesh.v -r maskXXXX.png -o mesh-dist.v
AUTHOR(s)
Gert Wollny
COPYRIGHT
This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY
NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3
(or later). For more information run the program with the option '--copyright'.
USER COMMANDS v2.4.6 mia-meshdistance-to-stackmask(1)