NAME

       mia-2dseriescorr - Evaluate the time-intensity correlation in a series of images.

SYNOPSIS

       mia-2dseriescorr -i <in-base> -o <outname> [options]

DESCRIPTION

       mia-2dseriescorr  Given  a set of images of temporal sucession, evaluates images that represent the time-
       intensity correlation in horizontal and vertical direction as well as average correlation of  each  pixel
       with its neighbors. All input images must be of the same pixel type and size.

OPTIONS

              -i --in-base=(required, input); io
                     input file name base
                      For supported file types see PLUGINS:2dimage/io

              -o --outname=(required, output); io
                     output file name to save the avarage per-pixel correlation
                      For supported file types see PLUGINS:2dimage/io

              -z --horizontal=(output); io
                     horiZontal correlation output file name
                      For supported file types see PLUGINS:2dimage/io

              -t --vertical=(output); io
                     verTical  correlation output file name
                      For supported file types see PLUGINS:2dimage/io

              -k --skip=2
                     skip images at beginning of series

              -e --end=60
                     last image in series

   Help & Info
              -V --verbose=warning
                     verbosity  of  output,  print  messages  of  given  level  and higher priorities. Supported
                     priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower  or  equal  to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

PLUGINS: 2dimage/io

       bmp       BMP  2D-image  input/output  support. The plug-in supports reading and writing of binary images
                 and 8-bit gray scale images. read-only support is provided for 4-bit  gray  scale  images.  The
                 color table is ignored and the pixel values are taken as literal gray scale values.

                     Recognized file extensions:  .BMP, .bmp

                     Supported element types:
                       binary data, unsigned 8 bit

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       dicom     2D image io for DICOM

                     Recognized file extensions:  .DCM, .dcm

                     Supported element types:
                       signed 16 bit, unsigned 16 bit

       exr       a 2dimage io plugin for OpenEXR images

                     Recognized file extensions:  .EXR, .exr

                     Supported element types:
                       unsigned 32 bit, floating point 32 bit

       jpg       a 2dimage io plugin for jpeg gray scale images

                     Recognized file extensions:  .JPEG, .JPG, .jpeg, .jpg

                     Supported element types:
                       unsigned 8 bit

       png       a 2dimage io plugin for png images

                     Recognized file extensions:  .PNG, .png

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit

       raw       RAW 2D-image output support

                     Recognized file extensions:  .RAW, .raw

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

       tif       TIFF 2D-image input/output support

                     Recognized file extensions:  .TIF, .TIFF, .tif, .tiff

                     Supported element types:
                       binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

       vista     a 2dimage io plugin for vista images

                     Recognized file extensions:  .-, .V, .VISTA, .v, .vista

                     Supported element types:
                       binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit,
                       unsigned 32 bit, floating point 32 bit, floating point 64 bit

EXAMPLE

       Evaluate  the  time-intensity correaltions for an image series imageXXXX.png starting at image 2 and stop
       at image 30. Store the results in horizontal.exr, and vertical.exr.

       mia-2dseriescorr -i image0000.png -k 2 -e 30 -z horizontal.exr -t vertical.exr

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes  with   ABSOLUTELY
       NO  WARRANTY   and   you  may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3
       (or later). For more information run the program with the option '--copyright'.

USER COMMANDS                                        v2.4.6                                  mia-2dseriescorr(1)