Provided by: samtools_1.10-3_amd64 
NAME
samtools split - splits a file by read group.
SYNOPSIS
samtools split [options] merged.sam|merged.bam|merged.cram
DESCRIPTION
Splits a file by read group, producing one or more output files matching a common prefix (by default
based on the input filename) each containing one read-group.
The -u option may be used to specify the output filename for any records without an RG tag.
OPTIONS
-u FILE1 Put reads with no RG tag or an unrecognised RG tag into FILE1
-h FILE2 Use the header from FILE2 when writing the file given in the -u option. This header
completely replaces the one from the input file. It must be compatible with the input file
header, which means it must have the same number of references listed in the @SQ lines and
the references must be in the same order and have the same lengths.
-f STRING Output filename format string (see below) ["%*_%#.%."]
-v Verbose output
--no-PG Do not add a @PG line to the header of the output file.
Format string expansions:
%% %
%* basename
%# @RG index
%! @RG ID
%. output format filename extension
AUTHOR
Written by Martin Pollard from the Sanger Institute.
SEE ALSO
samtools(1), samtools-addreplacerg(1) Samtools website: <http://www.htslib.org/>