Provided by: seqan-apps_2.4.0+dfsg-12ubuntu2_amd64 
NAME
tree_recon - Tree reconstruction
SYNOPSIS
tree_recon [OPTIONS] -m IN.DIST
DESCRIPTION
Reconstruct phylogenetic tree from Phylip matrix IN.DIST.
OPTIONS
-h, --help
Display the help message.
--version
Display version information.
Input / Output:
-m, --matrix INPUT_FILE
Name Phylip distance matrix file. Must contain at least three species. Valid filetype is: .dist.
-o, --out-file OUTPUT_FILE
Path to write output to. Valid filetypes are: .newick and .dot. Default: tree.dot.
Algorithm Options:
-b, --build STRING
Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete
linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining
creates an unrooted tree. We root that tree at the least joined pair. One of nj, min, max, avg,
and wavg. Default: nj.
CONTACT AND REFERENCES
For questions or comments, contact:
Tobias Rausch <rausch@embl.de>
SeqAn Homepage:
http://www.seqan.de