NAME

       csg_density - Part of the VOTCA package

SYNOPSIS

       csg_density [OPTION] [OPTIONPARAMETERS]

DESCRIPTION

       Calculates the mass density distribution along a box axis or radial density profile from reference point

       Please visit the program site at __http://www.votca.org__.

OPTIONS

       Allowed options:

       -h [ --help ]
              display this help and exit

       --verbose
              be loud and noisy

       --verbose1
              be very loud and noisy

       -v [ --verbose2 ]
              be extremly loud and noisy

       --top arg
              atomistic topology file

       Mapping options:

       --cg arg
              [OPTIONAL]  coarse  graining mapping and bond definitions (xml-file). If no file is given, program
              acts on original trajectory

       --map-ignore arg
              list of molecules to ignore if mapping is done separated by ;

       Specific options::

       --type arg (=mass)
              density type: mass or number

       --axis arg (=r)
              [x|y|z|r] density axis (r=spherical)

       --step arg (=0.01)
              spacing of density

       --block-length arg
              write blocks of this length, the averages are cleared after every write

       --out arg
              Output file

       --rmax arg
              rmax (default for [r] =min of all box vectors/2, else l )

       --scale arg (=1)
              scale factor for the density

       --molname arg (=*)
              molname

       --filter arg (=*)
              filter bead names

       --ref arg
              reference zero point

       Trajectory options:

       --trj arg
              atomistic trajectory file

       --begin arg (=0)
              skip frames before this time (only works for Gromacs files)

       --first-frame arg (=0)
              start with this frame

       --nframes arg
              process the given number of frames

AUTHORS

       Written and maintained by the VOTCA Development Team <devs@votca.org>

       This Manual Page was converted from t2t format to the this format  by  txt2tags  (http://txt2tags.org)  !
       The t2t file was extracted from 'csg_density --help' by help2t2t (version 1.6_rc1 )

COPYRIGHT

       Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)

       Licensed  under  the  Apache  License,  Version  2.0 (the "License"); you may not use this file except in
       compliance with the License.  You may obtain a copy of the License at

           http://www.apache.org/licenses/LICENSE-2.0

       Unless required by applicable law or agreed to in writing, software  distributed  under  the  License  is
       distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
       See the License for the specific language governing permissions and limitations under the License.