NAME

       ecattominc - convert an ecat format file (version 6.x or 7.x) to a minc format file

SYNOPSIS

       ecattominc [<options>] <infile> <outfile.mnc>

       ecattominc [-help]

DESCRIPTION

       ecattominc  will  convert  an  ecat  data  file  (version  6.x  or  7.x) to a minc file format Unless the
       -small_header option is specified, ecattominc will conserve the maximum information from the ecat  header
       and  subheader  fields  which  will be respectively stored as attributes of the ecat-main and ecat-subhdr
       minc variables.  By default the whole 3D or 4D volume is converted, however, ecattominc  allows  for  the
       selection  of slice and frame ranges to be copied.  The voxel values of the generated minc file are decay
       corrected, unless the nodecay_correct flag is specified.  Finally, blood data file can be inserted within
       the minc file with the -bloodfile option.

OPTIONS

       Note  that  options  can  be  specified in abbreviated form (as long as they are unique) and can be given
       anywhere on the command line.

General options

       -byte: Write out data as bytes (default).

       -short: Write out data as short integers.

       -clobber: Overwrite existing file.

       -noclobber: Don't overwrite existing file (default).

       -verbose: List files as they are converted (default)

       -quiet: Do not list files as they are converted.

Command specific options

       -decay_correct: Do decay correction on images (default).

       -nodecay_correct: Don't do decay correction.

       -slices:Range of slices to copy (counting from 0).
               Default value: -2147483648 -2147483648

       -frames: Range of frames to copy (counting from 0).
               Default value: -2147483648 -2147483648

       -frame: Single frame to copy (counting from 0).
               Default value: -2147483648

       -small_header: Copy only basic header information.

       -all_header: Copy all header information (default).

       -bloodfile: Insert blood data from this file.

Generic options for all commands

       -help: Print summary of command-line options and abort

KNOWN BUGS

       No bug listed so far :=)

SEE ALSO

       minctoecat(1), rawtominc(1), minctoraw(1), dicomtominc(1)

AUTHOR

       Peter Neelin and Anthonin Reilhac (anthonin.reilhac@cermep.fr)

COPYRIGHTS

       Copyrights 2005 by Peter Neelin

                                                                                                   ecattominc(1)