NAME

       garli - phylogenetic analysis of molecular sequence data using maximum-likelihood (MPI version)

SYNOPSIS

       mpirun [MPI OPTIONS] garli-mpi -[# of times to execute config file] [config filename]

DESCRIPTION

       GARLI,  Genetic  Algorithm  for Rapid Likelihood Inference is a program for inferring phylogenetic trees.
       Using an approach similar to a classical genetic algorithm, it rapidly searches the space of evolutionary
       trees  and  model  parameters  to  find  the  solution  maximizing  the  likelihood  score. It implements
       nucleotide, amino acid and codon-based models of sequence evolution,  and  runs  on  all  platforms.  The
       latest  version  adds  support  for  partitioned  models  and morphology-like datatypes.  This is the MPI
       version of Garli.

OPTIONS

       -i, --interactive
              interactive mode (allow and/or expect user feedback)

       -b, --batch
              batch mode (do not expect user input) (batch is the default for the version you are running)

       -v, --version
              print version information and exit

       -h, --help
              print this help and exit

       -t     run internal tests (requires dataset and config file)

       -V     validate: load config file and data, validate config file, data,  starting  trees  and  constraint
              files, print required memory and selected model, then exit

       NOTE:  If no config filename is passed on the command line the program will look in the current directory
       for a file named "garli.conf"

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.