NAME

       hmmc2 - example client for the HMMER daemon

SYNOPSIS

       hmmc2 [options]

DESCRIPTION

       Hmmc2  is  a  text client for the hmmpgmd or hmmpgmd_shard daemons.  When run, it opens a connection to a
       daemon at the specified IP address and port, and then enters an interactive loop waiting for the user  to
       input  commands  to be sent to the daemon.  See the User's Guide for the HMMER Daemon for a discussion of
       hmmpgmd's command format.

OPTIONS

       -i <IP address>
              Specify the IP address of the daemon that hmmc2 should connect to.  Defaults to 127.0.0.1  if  not
              provided

       -p <port number>
              Specify the port number that the daemon is listening on.  Defaults to 51371 if not provided

       -S     Print the scores of any hits found during searches.

       -A     Print  the  alignment  of any hits found during searches.  This is a superset of the "-S" flag, so
              providing both is redundant.

SEE ALSO

       See hmmer(1) for a master man page with a list of all the individual man pages for programs in the  HMMER
       package.

       For complete documentation, see the user guide that came with your HMMER distribution (Userguide.pdf); or
       see the HMMER web page (http://hmmer.org/).

COPYRIGHT

       Copyright (C) 2019 Howard Hughes Medical Institute.
       Freely distributed under the BSD open source license.

       For additional information on copyright and licensing, see the file called COPYRIGHT in your HMMER source
       distribution, or see the HMMER web page (http://hmmer.org/).

AUTHOR

       http://eddylab.org