NAME

       tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

       tree-mean-lengths tree-file < in-file

DESCRIPTION

       Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

       -h, --help
              produce help message

       --tree arg
              tree to re-root

       -s arg (=0), --skip arg (=0)
              number of tree samples to skip

       -u arg, --until arg
              Read until this number of trees.

       --prune arg
              Comma-separated taxa to remove

       --simple
              Ignore all branches not in the query tree

       -x arg (=1), --subsample arg (=1)
              factor by which to sub-sample

       --var  report standard deviation of branch lengths instead of mean

       --no-node-lengths
              ignore branches not in the specified topology

       --safe Don't die if no trees match the topology

       --show-node-lengths
              Output special format

       -v, --verbose
              Output more log messages on stderr.

REPORTING BUGS:

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

       Benjamin Redelings.

                                             Feb 2018                        tree-mean-lengths(1)