Ubuntu Manpages

Bio::Tools::Motif::Pattern

Represents a pattern used by the Bio::Tools::Motif module.

  use Bio::Tools::Motif::Pattern;
  # Create a new object.
  $m = new Bio::Tools::Motif::Pattern(-motifid => 'P07110',
                                      -localization => 'OuterMembrane',
                                      -regexp => '(GG.G.D.*){4}',
                                      -comment => 'FIMBRIAL_USHER Pattern');
  # Accessor methods.
  $val = $m->motif_id();
  $val = $m->localization();
  $val = $m->regexp();
  $val = $m->comment();

Cory Spencer <cspencer@sfu.ca>

  Bio::Tools::Motif

Thanks go out to Fiona Brinkman, Jennifer Gardy and the other members of the Simon Fraser University Brinkman laboratory.