NAME

       chainsaw - Cut a gene tree based on a reconciliation

SYNOPSIS

       chainsaw [OPTIONS] reconciled-gene-tree  species-tree

DESCRIPTION

       reconciled-gene-tree  is  the filename of the file containing trees in PRIME format. Notice that the node
       id is optional and if left out all species nodeswill be used recursively.

       species-tree is the species tree

OPTIONS

       --help Display help (this text).

       -V, --version
              Print version and exit

       -g, --guest-tree-format primeOrHybrid|inputxml
              The input format. Default is primeOrHybrid

       -h, --host-tree-format primeOrHybrid|inputxml
              The input format of the host tree. Default is primeOrHybrid

       -x, --node-name=STRING
              A named species node to cut at

       -i, --node-id=INT
              The numerical id of a species node to cut at

EXIT STATUS

       0      Successful program execution.

       1      Some error occurred

URL

       The prime-phylo home page: http://prime.sbc.su.se

SEE ALSO

       primeDTLSR(1),  primeDLRS(1),  primeGEM(1),  showtree(1),  reconcile(1),  reroot(1),   tree2leafnames(1),
       treesize(1)

prime-phylo 1.0.11                                13 Mar, 2012                                       chainsaw(1)