chainsaw
Cut a gene tree based on a reconciliation
- Provided by: prime-phylo (Version: 1.0.11-10)
- Report a bug
SYNOPSIS
chainsaw [OPTIONS] reconciled-gene-tree species-tree
DESCRIPTION
reconciled-gene-tree is the filename of the file containing trees in PRIME format. Notice that the node id is optional and if left out all species nodeswill be used recursively.
species-tree is the species tree
OPTIONS
- --help
- Display help (this text).
- -V, --version
- Print version and exit
- -g, --guest-tree-format primeOrHybrid|inputxml
- The input format. Default is primeOrHybrid
- -h, --host-tree-format primeOrHybrid|inputxml
- The input format of the host tree. Default is primeOrHybrid
- -x, --node-name=STRING
- A named species node to cut at
- -i, --node-id=INT
- The numerical id of a species node to cut at
EXIT STATUS
- 0
- Successful program execution.
- 1
- Some error occurred
URL
SEE ALSO
primeDTLSR(1), primeDLRS(1), primeGEM(1), showtree(1), reconcile(1), reroot(1), tree2leafnames(1), treesize(1)