Provided by: postgresql-comparator_2.3.2-2_amd64 
NAME
pg_comparator - efficient table content comparison and synchronization
SYNOPSIS
pg_comparator [options as --help --option --man] conn1 conn2
DESCRIPTION
This script performs a network and time efficient comparison or synchronization of two
possibly large tables in PostgreSQL, MySQL or SQLite databases, so as to detect inserted,
updated or deleted tuples between these tables. The algorithm is efficient especially if
the expected differences are relatively small.
The implementation is quite generic: multi-column keys (but there must be a key!), no
assumption of data types other that they can be cast to text, subset of columns can be
used for the comparison, handling of NULL values...
This script focuses on the comparison algorithm, hence the many options. The fact that it
may do anything useful, such as checking that a replication tool does indeed replicates
your data, or such as synchronizing tables, is a mere side effect.
OPTIONS
Options allow requesting help or to adjust some internal parameters. Short one-letter
options are also available, usually with the first letter of the option name.
"--aggregate=(sum|xor)" or "-a (sum|xor)"
Aggregation function to be used for summaries, either xor or sum. It must operate on
the result of the checksum function. For PostgreSQL and SQLite, the xor aggregate
needs to be loaded. There is a signed/unsigned issue on the key hash when using xor
for comparing tables on MySQL or SQLite vs PostgreSQL. We provide a new "ISUM"
aggregate for SQLite because both "SUM" and "TOTAL" do some incompatible handling of
integer overflows.
Default is sum because it is available by default and works in mixed mode.
"--ask-pass"
Ask for passwords interactively. See also "--env-pass" option below.
Default is not to ask for passwords.
"--asynchronous" or "-A", "--no-asynchronous" or "-X"
Whether to run asynchronous queries. This provides some parallelism, however the two
connections are more or less synchronized per query.
Default is to use asynchronous queries to enable some parallelism.
"--checksum-computation=(create|insert)" or "--cc=..."
How to create the checksum table. Use create to use a "CREATE ... AS SELECT ..."
query, or insert to use a "CREATE ...; INSERT ... SELECT ..." query. The former will
require an additional counting to get the table size, so in the end there are two
queries anyway. There is a type size issue with the insert strategy on MySQL, the
cumulated key string length must be under 64 bytes.
Default is create because it always works for both databases.
"--checksum-function=fun" or "--cf=fun" or "-c fun"
Checksum function to use, either ck, fnv or md5. For PostgreSQL, MySQL and SQLite the
provided ck and fnv checksum functions must be loaded into the target databases.
Choosing md5 does not come free either: the provided cast functions must be loaded
into the target databases and the computation is more expensive.
Default is ck, which is fast, especially if the operation is cpu-bound and the
bandwidth is reasonably high.
"--checksum-size=n" or "--check-size=n" or "--cs=n" or "-z n"
Tuple checksum size, must be 2, 4 or 8 bytes. The key checksum size is always 4 bytes
long.
Default is 8, so that the false negative probability is very low. There should be no
reason to change that.
"--cleanup"
Drop checksum and summary tables beforehand. Useful after a run with "--no-temp" and
"--no-clear", typically used for debugging.
Default is not to drop because it is not needed.
"--clear"
Drop checksum and summary tables explicitly after the computation. Note that they are
dropped implicitly by default when the connection is closed as they are temporary, see
"-(-no)-temporary" option. This option is useful for debugging.
Default is not to clear explicitly the checksum and summary tables, as it is not
needed.
"--debug" or "-d"
Set debug mode. Repeat for higher debug levels. See also "--verbose". Beware that
some safe gards about option settings are skipped under debug so as to allow testing
under different conditions.
Default is not to run in debug mode.
"--env-pass='var'"
Take password from environment variables "var1", "var2" or "var" for connection one,
two, or both. This is tried before asking interactively if "--ask-pass" is also set.
Default is not to look for passwords from environment variables.
"--expect n" or "-e n"
Total number of differences to expect (updates, deletes and inserts). This option is
only used for non regression tests. See the TESTS section.
"--folding-factor=7" or "-f 7"
Folding factor: log2 of the number of rows grouped together at each stage, starting
from the leaves so that the first round always groups as many records as possible. The
power of two allows one to use masked computations. The minimum value of 1 builds a
binary tree.
Default folding factor log2 is 7, i.e. size 128 folds. This default value was chosen
after some basic tests on medium-size cases with medium or low bandwidth. Values from
4 to 8 should be a reasonable choice for most settings.
"--help" or "-h"
Show short help.
"--key-checksum='kcs'" or "--kcs=..."
Use key checksum attribute of this name, which must be already available in the tables
to compare. This option also requires option "--tuple-checksum". See also the
EXAMPLES section below for how to set a checksum trigger. Consider "--use-key"
instead if you already have a reasonably distributed integer primary key.
Default is to build both key and tuple checksums on the fly.
"--lock", "--no-lock"
Whether to lock tables. Setting the option explicitly overrides the default one way
or another. For PostgreSQL, this option requires "--transaction", which is enabled by
default.
Default depends on the current operation: the table is not locked for a comparison,
but it is locked for a synchronization.
"--long-read-len=0" or "-L 0"
Set max size for fetched binary large objects. Well, it seems to be ignored at least
by the PostgreSQL driver.
Default is to keep the default value set by the driver.
"--man" or "-m"
Show manual page interactively in the terminal.
"--max-ratio=0.1"
Maximum relative search effort. The search is stopped if the number of results is
above this threshold expressed relatively to the table size. Use 2.0 for no limit
(all tuples were deleted and new ones are inserted).
Default is 0.1, i.e. an overall 10% difference is allowed before giving up.
"--max-report=n"
Maximum absolute search effort. The search is stopped if the number of differences
goes beyond this threshold. If set, the previous "--max-ratio" option is ignored,
otherwise the effort is computed with the ratio once the table size is known.
Default is to compute the maximum number of reported differences based on the
"--max-ratio" option, with a minimum of 100 differences allowed.
"--max-levels=0"
Maximum number of levels used. Allows one to cut-off folding. 0 means no cut-off.
Setting a value of 1 would only use the checksum table, without summaries. A value of
3 or 4 would be raisonable, as the last levels of the tree are nice for the
theoretical complexity formula, but do not improve performance in practice.
Default is 0.
"--null='text'"
How to handle NULL values. Either hash to hash all values, where NULL has one special
hash value, or text where NULL values are substituted by the "NULL" string.
Default is text because it is faster.
"--option" or "-o"
Show option summary.
"--pg-text-cast"
With PostgreSQL add explicit TEXT casts to work around some typing issues.
"--pg-copy=128"
Experimental option to use PostgreSQL's COPY instead of INSERT/UPDATE when
synchronizing, by chunks of the specified size.
"--prefix='pgc_cmp'"
Name prefix, possibly schema qualified, used for generated comparison tables by
appending numbers to it. Consider changing the prefix if you expect several
comparisons to run concurrently against the same database.
Default is "pgc_cmp". Checksum tables is named "pgc_cmp_1_0" and "pgc_cmp_2_0", and
summary tables are named by increasing the last number.
"--report", "--no-report"
Report differing keys to stdout as they are found.
Default is to report.
"--separator='|'" or "-s '|'"
Separator string or character used when concatenating key columns for computing
checksums.
Defaults to the pipe '|' character.
"--size=n"
Assume this value as the table size. It is sufficient for the algorithm to perform
well that this size is in the order of magnitude of the actual table size.
Default is to query the table sizes, which is skipped if this option is set.
"--source-1='DBI:...'", "--source-2='...'" or "-1 '...'", "-2 '...'"
Take full control of DBI data source specification and mostly ignore the comparison
authentication part of the source or target URLs. One can connect with
"DBI:Pg:service=backup", use an alternate driver, set any option allowed by the
driver... See "DBD::Pg" and "DBD:mysql" manuals for the various options that can be
set through the DBI data source specification. However, the database server specified
in the URL must be consistent with this source specification so that the queries'
syntax is the right one.
Default is to rely on the two URL arguments.
"--skip-inserts", "--skip-updates", "--skip-deletes"
When synchronizing, do not perform these operations.
Default under "--synchronize" is to do all operations.
"--stats=(txt|csv)"
Show various statistics about the comparison performed in this format. Also, option
"--stats-name" gives the test a name, useful to generate csv files that will be
processed automatically.
Default is not to show statistics, because it requires additional synchronizations and
is not necessarily interesting to the user.
"--synchronize" or "-S"
Actually perform operations to synchronize the second table wrt the first. Well, not
really, it is only a dry run. It is actually done if you add "--do-it" or "-D". Save
your data before attempting anything like that!
Default is not to synchronize.
"--temporary", "--no-temporary"
Whether to use temporary tables. If you don't, the tables are kept by default at the
end, so they will have to be deleted by hand. See "--clear" option to request a
cleanup. This option is useful for debugging.
Default is to use temporary tables that are automatically wiped out when the
connection is closed.
"--unlogged", "--no-unlogged"
Use unlogged tables for storing checksums. These tables are not transactional, so it
may speed up things a little. However, they are not automatically cleaned up at the
end. See "--clear" option to request a cleanup.
Default is not to use unlogged tables.
"--threads" or "-T", "--no-threads" or "-N"
Highly EXPERIMENTAL feature.
Try to use threads to perform computations in parallel, with some hocus-pocus because
perl thread model does not really work well with DBI. Perl threads are rather heavy
and slow, more like communicating processes than light weight threads, really.
This does NOT work at all with PostgreSQL. It works partially with MySQL, at the
price of turning off "--transaction".
Default is not to use threads, as it does not work for all databases.
"--timeout n"
Timeout comparison after "n" seconds.
Default is no timeout. Be patient.
"--transaction", "--no-transaction"
Whether to wrap the whole algorithm in a single transaction.
Default is to use a wrapping transaction, as it seems to be both faster and safer to
do so.
"--tuple-checksum='tcs'" or "--tcs=..."
Use tuple checksum attribute of this name, which must be already available in the
tables to compare. This option requires to set also either "--use-key" or
"--key-checksum=..." above. The provided checksum attributes must not appear in the
lists of key and value columns. See also the EXAMPLES section below for how to set a
checksum trigger.
Default is to build both key and tuple checksums on the fly.
"--use-key" or "-u"
Whether to directly use the value of the key to distribute tuples among branches. The
key must be simple, integer, not NULL, and evenly distributed. If you have a
reasonably spread integer primary key, consider using this option to avoid half of the
checksum table hash computations.
Default is to hash the key, so as to handle any type, composition and distribution.
"--use-null", "--no-use-null"
Whether to use the information that a column is declared NOT NULL to simplify
computations by avoiding calls to COALESCE to handle NULL values.
Default is to use this information, at the price of querying table metadata.
"--verbose" or "-v"
Be verbose about what is happening. The more you ask, the more verbose.
Default is to be quiet, so that possible warnings or errors stand out.
"--version" or "-V"
Show version information and exit.
"--where=..."
SQL boolean condition on table tuples for partial comparison. Useful to reduce the
load if you know that expected differences are in some parts of your data, say those
time-stamped today... The same condition is passed on both sides, so both tables must
be pretty similar so that it works. This is usually the case.
Default is to compare whole tables.
ARGUMENTS
The two arguments describe database connections with the following URL-like syntax, where
square brackets denote optional parts. Many parts are optional with a default. The minimum
syntactically correct specification is "/", but that does not necessary mean anything
useful.
[driver://][login[:pass]@][host][:port]/[base/[[schema.]table[?key[:cols]]]]
See the EXAMPLES section below, and also the "--source-*" options above.
Note that some default value used by DBI drivers may be changed with driver-specific
environment variables, and that DBI also provides its own defaults and overrides, so what
actually happens may not always be clear. Default values for the second URL are mostly
taken from the first URL.
driver
Database driver to use. Use pgsql for PostgreSQL, mysql for MySQL, sqlite for SQLite.
Heterogeneous databases may be compared and synchronized, however beware that subtle
typing, encoding and casting issues may prevent heterogeneous comparisons or
synchronizations to succeed. Default is pgsql for the first connection, and same as
first for second.
For SQLite, the authentication part of the URL (login, pass, host, port) is expected
to be empty, thus the full URL should look like:
sqlite:///base.db/table?key,col:other,columns
Moreover, setting the PGC_SQLITE_LOAD_EXTENSION environment variable with
":"-separated shared object files loads these into SQLite.
login
Login to use when connecting to database. Default is username for first connection,
and same as first connection for second.
pass
Password to use when connecting to database. Note that it is a bad idea to put a
password as a command argument. Default is none for the first connection, and the
same password as the first connection for the second if the connection targets the
same host, port and uses the same login. See also "--ask-pass" and "--env-pass"
options.
host
Hostname or IP to connect to. Default is the empty string, which means connecting to
the database on localhost with a UNIX socket.
port
TCP-IP port to connect to. Default is 5432 for PostgreSQL and 3306 for MySQL.
base
Database catalog to connect to. Default is username for first connection. Default is
same as first connection for second connection. For SQLite, provide the database file
name. The path is relative by default, but can be made absolute by prepending an
additional '/':
sqlite:////var/cache/sqlite/base.db/table?...
schema.table
The possibly schema-qualified table to use for comparison. No default for first
connection. Default is same as first connection for second connection.
Note that MySQL does not have schemas, so the schema part must be empty. However,
strangely enough, their database concept is just like a schema, so one could say that
MySQL really does not have databases, although there is something of that name. Am I
clear?
keys
Comma-separated list of key columns. Default is table primary key for first
connection. Default is same as first connection for second connection. The key
cannot be empty. If you do not have a way of identifying your tuples, then there is no
point in looking for differences.
cols
Comma-separated list of columns to compare. May be empty. Default is all columns but
keys for first connection. Default is same as first connection for second connection.
Beware that "...?key:" means an empty cols, while "...?key" sets the default by
querying table metadata.
EXAMPLES
Compare tables calvin and hobbes in database family on localhost, with key id and columns
c1 and c2:
./pg_comparator /family/calvin?id:c1,c2 /family/hobbes
Compare tables calvin in default database on localhost and the same table in default
database on sablons, with key id and column data:
./pg_comparator localhost/family/calvin?id:data sablons/
Synchronize "user" table in database "wikipedia" from MySQL on "server1" to PostgreSQL on
"server2".
./pg_comparator -S -D --ask-pass \
mysql://calvin@server1/wikipedia/user pgsql://hobbes@server2/
For PostgreSQL, you may add trigger-maintained key and tuple checksums as:
-- TABLE Foo(id SERIAL PRIMARY KEY, data ... NOT NULL);
-- add a key and tuple checksum attributes
-- the key checksum can be skipped if you use --use-key,
-- for which the key must be a simple NOT NULL integer.
ALTER TABLE Foo
ADD COLUMN key_cs INT4 NOT NULL DEFAULT 0,
ADD COLUMN tup_cs INT8 NOT NULL DEFAULT 0;
-- function to update the tuple checksum
-- if some attributes may be NULL, they must be coalesced
CREATE FUNCTION foo_cs() RETURNS TRIGGER AS $$
BEGIN
-- compute key checksum
NEW.key_cs = cksum4(NEW.id);
-- compute tuple checksum
NEW.tup_cs = cksum8(NEW.id || '|' || NEW.data);
RETURN NEW;
END; $$ LANGUAGE plpgsql;
-- set trigger to call the checksum update function
CREATE TRIGGER foo_cs_trigger
BEFORE UPDATE OR INSERT ON Foo
FOR EACH ROW EXECUTE PROCEDURE foo_cs();
-- if table Foo is not initially empty,
-- update its contents to trigger checksum computations
UPDATE Foo SET id=id;
Then a fast comparison, which does not need to compute the initial checksum table, can be
requested with:
./pg_comparator --tcs=tup_cs --kcs=key_cs \
admin@server1/app/Foo?id:data hobbes@server2/
As the primary key is a simple integer, the key_cs could be left out and the comparison
could be launched with:
./pg_comparator --tcs=tup_cs --use-key \
admin@server1/app/Foo?id:data hobbes@server2/
OUTPUT
The output of the command consists of lines describing the differences found between the
two tables. They are expressed in term of insertions, updates or deletes and of tuple
keys.
UPDATE k
Key k tuple is updated from table 1 to table 2. It exists in both tables with
different values.
INSERT k
Key k tuple does not appear in table 2, but only in table 1. It must be inserted in
table 2 to synchronize it wrt table 1.
DELETE k
Key k tuple appears in table 2, but not in table 1. It must be deleted from 2 to
synchronize it wrt table 1.
In case of tuple checksum collisions, false negative results may occur. Changing the
checksum function would help in such cases. See the ANALYSIS sub-section.
INSTALL
This section describes how to install extensions (functions, casts, aggregates) needed by
pg_comparator for the different target databases.
First, get pg_comparator sources
<http://www.coelho.net/pg_comparator/pg_comparator-2.3.2.tgz>.
PostgreSQL
For installing on PostgreSQL, you must ensure that the "pg_config" command found in your
path is the one of the target PostgreSQL server, and that development packages are
installed.
Then compile and install the extensions' shared objects:
sh> make pgsql_install
To load the extension files into the target "DB" database, where "..." are the connection
options:
sh> psql ... -c 'CREATE EXTENSION pgcmp' DB
To uninstall:
sh> psql ... -c 'DROP EXTENSION pgcmp' DB
sh> make pgsql_uninstall
MySQL
For installing on MySQL, you must ensure that the "mysql_config" command found in your
path is the one of the target MySQL server, and that development packages are installed.
Then compile and install the extensions' shared objects:
sh> make mysql_install
And load the extension files into the database:
sh> mysql ... < PATH-TO-EXTENSION/mysql_casts.sql
sh> mysql ... < PATH-TO-EXTENSION/mysql_checksum.sql
See "mysql_config --plugindir" for the extension directory path. On some systems
"PATH-TO-EXTENSION" might be "/usr/lib/mysql/contrib".
To uninstall:
sh> make mysql_uninstall
SQLite
For installing with SQLite, the corresponding development package is needed.
First compile and install the extensions' shared objects (you may adjust "SQLITE.libdir"
make variable to change the target directory, which is by default "/usr/local/lib"):
sh> make sqlite_install
Then load the extension by executing (to do it always, you may append the line to your
".sqliterc" file):
SELECT load_extension('/usr/local/lib/sqlite_checksum.so');
To uninstall:
sh> make sqlite_uninstall
DEPENDENCES
Three support functions are needed on the database:
1.
The "COALESCE" function takes care of NULL values in columns.
2.
A checksum function must be used to reduce and distribute key and columns values. It may
be changed with the "--checksum" option. Its size can be selected with the
"--checksize" option (currently 2, 4 or 8 bytes). The checksums also require casts to be
converted to integers of various sizes.
Suitable implementations are available for PostgreSQL and can be loaded into the server
by processing "share/contrib/pgc_checksum.sql" and "share/contrib/pgc_casts.sql". New
checksums and casts are also available for MySQL, see "mysql_*.sql". An loadable
implementation of suitable checksum functions is also available for SQLite, see
"sqlite_checksum.*".
The "ck" checksum is based on Jenkins hash <https://en.wikipedia.org/wiki/Jenkins_hash>,
which relies on simple add, shift and xor integer operations. The "fnv" checksum is
inspired by FNV hash <https://en.wikipedia.org/wiki/Fowler_Noll_Vo_hash> (64 bits 1a
version) which uses xor and mult integer operations, although I also added some shift
and add to help tweak high bits.
3.
An aggregate function is used to summarize checksums for a range of rows. It must
operate on the result of the checksum function. It may be changed with the
"--aggregate" option.
Suitable implementations of a exclusive-or "xor" aggregate are available for PostgreSQL
and can be loaded into the server by processing "share/contrib/xor_aggregate.sql".
The "sqlite_checksum.*" file also provides a "xor" and "sum" aggregates for SQLite that
are compatible with other databases.
Moreover several perl modules are useful to run this script:
• "Getopt::Long" for option management.
• "DBI", "DBD::Pg" to connect to PostgreSQL, "DBD::mysql" to connect to MySQL, and
"DBD::SQLite" to connect to SQLite.
• "Term::ReadPassword" for "--ask-pass" option.
• "Pod::Usage" for doc self-extraction ("--man" "--opt" "--help").
• "threads" for the experimental threaded version with option "--threads".
• "Digest::MD5" for md5 checksum with SQLite.
Modules are only loaded by the script if they are actually required.
ALGORITHM
The aim of the algorithm is to compare the content of two tables, possibly on different
remote servers, with minimum network traffic. It is performed in three phases.
1.
A checksum table is computed on each side for the target table.
2.
A fist level summary table is computed on each side by aggregating chunks of the
checksum table. Other levels of summary aggregations are then performed till there is
only one row in the last table, which then stores a global checksum for the whole
initial target tables.
3.
Starting from the upper summary tables, aggregated checksums are compared from both
sides to look for differences, down to the initial checksum table. Keys of differing
tuples are displayed.
CHECKSUM TABLE
The first phase computes the initial checksum table T(0) on each side. Assuming that key
is the table key columns, and cols is the table data columns that are to be checked for
differences, then it is performed by querying target table T as follow:
CREATE TABLE T(0) AS
SELECT key AS pk, -- primary key
checksum(key) AS kcs, -- key checksum
checksum(key || cols) AS tcs -- tuple checksum
FROM t;
The initial key is kept, as it will be used to show differing keys at the end. The
rational for the kcs column is to randomize the key-values distribution so as to balance
aggregates in the next phase. The key must appear in the checksum also, otherwise content
exchanged between two keys would not be detected in some cases.
SUMMARY TABLES
Now we compute a set of cascading summary tables by grouping f (folding factor) checksums
together at each stage. The grouping is based on a mask on the kcs column to take
advantage of the checksum randomization. Starting from p=0 we build:
CREATE TABLE T(p+1) AS
SELECT kcs & mask(p+1) AS kcs, -- key checksum subset
XOR(tcs) AS tcs -- tuple checksum summary
FROM T(p)
GROUP BY kcs & mask(p+1);
The mask(p) is defined so that it groups together on average f checksums together: mask(0)
= ceil2(size); mask(p) = mask(p-1)/f; This leads to a hierarchy of tables, each one being
a smaller summary of the previous one:
level 0
checksum table, size rows, i.e. as many rows as the target table.
level 1
first summary table, (size/f) rows.
level p
intermediate summary table, (size/f**p) rows.
level n-1
one before last summary table, less than f rows.
level n
last summary table, mask is 0, 1 row.
It is important that the very same masks are used on both sides so that aggregations are
the same, allowing to compare matching contents on both sides.
SEARCH FOR DIFFERENCES
After all these support tables are built on both sides comes the search for differences.
When checking the checksum summary of the last tables (level n) with only one row, it is
basically a comparison of the checksum of the whole table contents. If they match, then
both tables are equal, and we are done. Otherwise, if these checksums differ, some
investigation is needed to detect offending keys.
The investigation is performed by going down the table hierarchy and looking for all kcs
for which there was a difference in the checksum on the previous level. The same query is
performed on both side at each stage:
SELECT kcs, tcs
FROM T(p)
WHERE kcs & mask(p+1) IN (kcs-with-diff-checksums-from-level-p+1)
ORDER BY kcs [and on level 0: , id];
And the results from both sides are merged together. When doing the merge procedure, four
cases can arise:
1.
Both kcs and tcs match. Then there is no difference.
2.
Although kcs does match, tcs does not. Then this kcs is to be investigated at the next
level, as the checksum summary differs. If we are already at the last level, then the
offending key can be shown.
3.
No kcs match, one supplemental kcs in the first side. Then this kcs correspond to
key(s) that must be inserted for syncing the second table wrt the first.
4.
No kcs match, one supplemental kcs in the second side. Then this kcs correspond to
key(s) that must be deleted for syncing the second table wrt the first.
Cases 3 and 4 are simply symmetrical, and it is only an interpretation to decide whether
it is an insert or a delete, taking the first side as the reference.
ANALYSIS
Let n be the number of rows, r the row size, f the folding factor, k the number of
differences to be detected, c the checksum size in bits, then the costs to identify
differences and the error rate is:
network volume
is better than k*f*ceil(log(n)/log(f))*(c+log(n)). the contents of k blocks of size f
is transferred on the depth of the tree, and each block identifier is of size log(n) and
contains a checksum c. It is independent of r, and you want k<<n. The volume of the
SQL requests is about k*log(n)*ceil(log(n)/log(f)), as the list of non matching
checksums k*log(n) may be dragged on the tree depth.
number of requests (on each side, the algorithm is symmetric)
minimum is 6+ceil(log(n)/log(f)) for equal tables, maximum is 6+2*ceil(log(n)/log(f)).
disk I/O traffic
is about n*r+n*ln(n)*(f/(f-1)).
false negative probability
i.e. part of the tables are considered equal although they are different. With a
perfect checksum function, this is the probability of a checksum collision at any point
where they are computed and should have been different: about
k*ceil(log(n)/log(f))*2**-c. For a million row table, expecting 1000 changes with the
default algorithm parameter values, this is about 2**10 *3/2**64, that is about one
chance in 2**52 merge runs.
The lower the folding factor f the better for the network volume, but the higher the
better for the number of requests and disk I/Os: the choice of f is a tradeoff.
The lower the checksum size c, the better for the network volume, but the worse for the
false negative probability.
If the available bandwidth is reasonable, the comparison will most likely be cpu-bound:
the time is spent mainly on computing the initial checksum table. Thus if you are
planning to check for differences quite often, consider maintaining a tuple checksum with
a trigger, and possibly a key checksum as well, and invoke with "--tuple-checksum" and
either "--key-checksum" or "--use-key".
IMPLEMENTATION ISSUES
The checksum implementation gives integers, which are constant length and easy to
manipulate afterwards.
The xor aggregate is a good choice because there is no overflow issue with it, it takes
into account all bits of the input, and it can easily be defined on any binary data. The
sum aggregate is also okay, but it requires some kind of underlying integer type.
NULL values must be taken care appropriately.
The folding factor and all modules are taken as power of two so as to use a masks.
There is a special management of large chunks of deletes or inserts which is implemented
although not detailed in the algorithmic overview and complexity analysis.
There is some efforts to build a PostgreSQL/MySQL compatible implementation of the
algorithm, which added hacks to deal with type conversions and other stuff.
This script is reasonably tested, but due to its proof of concept nature there is a lot of
options the combination of which cannot all be tested.
NOTE
If the tables to compare are in the same database, a simple SQL query can extract the
differences. Assuming Tables T1 and T2 with primary key id and non null contents data,
then their differences, that is how T2 differs from the reference T1, is summarized by the
following query:
SELECT COALESCE(T1.id, T2.id) AS key,
CASE WHEN T1.id IS NULL THEN 'DELETE'
WHEN T2.id IS NULL THEN 'INSERT'
ELSE 'UPDATE'
END AS operation
FROM T1 FULL JOIN T2 USING (id)
WHERE T1.id IS NULL -- DELETE
OR T2.id IS NULL -- INSERT
OR T1.data <> T2.data -- UPDATE
REFERENCES
A paper was presented at a conference about this tool and its algorithm: Remote Comparison
of Database Tables by Fabien Coelho, In Third International Conference on Advances in
Databases, Knowledge, and Data Applications (DBKDA), pp 23-28, St Marteen, The Netherlands
Antilles, January 2011. ISBN: 978-1-61208-002-4. Copyright IARIA 2011. Online at Think
Mind <http://www.thinkmind.org/index.php?view=article&articleid=dbkda_2011_2_10_30021>.
The algorithm and script was inspired by Taming the Distributed Database Problem: A Case
Study Using MySQL by Giuseppe Maxia in Sys Admin vol 13 num 8, Aug 2004, pp 29-40. See
Perl Monks <http://www.perlmonks.org/index.pl?node_id=381053> for details. In this paper,
three algorithms are presented. The first one compares two tables with a checksum
technique. The second one finds UPDATE or INSERT differences based on a 2-level (checksum
and summary) table hierarchy. The algorithm is asymmetrical, as different queries are
performed on the two tables to compare. It seems that the network traffic volume is in
k*(f+(n/f)+r), that it has a probabilistically-buggy merge procedure, and that it makes
assumptions about the distribution of key values. The third algorithm looks for DELETE
differences based on counting, with the implicit assumption that there are only such
differences.
In contrast to this approach, our fully symmetrical algorithm implements all three tasks
at once, to find UPDATE, DELETE and INSERT between the two tables. The checksum and
summary hierarchical level idea is reused and generalized so as to reduce the algorithmic
complexity.
From the implementation standpoint, the script is as parametric as possible with many
options, and makes few assumptions about table structures, types and values.
SEE ALSO
Michael Nacos made a robust implementation pg51g <http://pgdba.net/pg51g/> based on
triggers. He also noted that although database contents are compared by the algorithm, the
database schema differences can also be detected by comparing system tables which describe
them.
Benjamin Mead Vandiver's PhD Thesis Detecting and Tolerating Byzantine Faults in Database
Systems, Massachusset's Institute of Technology, May 2008 (report number
MIT-CSAIL-TR-2008-040). There is an interesting discussion in Chapter 7, where
experiments are presented with a Java/JDBC/MySQL implementation of two algorithms,
including this one.
Baron Schwartz discusses comparison algorithms in an online post
<http://tinyurl.com/mysql-data-diff-algorithm>.
Some more links:
• Adept SQL <http://www.adeptsql.com/>
• Altova Database Spy <http://www.altova.com/databasespy/>
• AUI Soft SQLMerger <http://auisoft.com/sqlmerger/>
• Clever Components dbcomparer <http://www.clevercomponents.com/products/dbcomparer/>
• Comparezilla <http://comparezilla.sourceforge.net/>
• Datanamic Datadiff <http://www.datanamic.com/datadiff/>
• DB Balance <http://www.dbbalance.com/db_cmp_pro.htm>
• DBConvert <https://dbconvert.com/postgresql/>
• DBSolo datacomp <http://www.dbsolo.com/datacomp.html>
• dbForge Data Compare <http://www.devart.com/dbforge/sql/datacompare/>
• DiffKit <http://www.diffkit.org/>
• Percona Toolkit <https://www.percona.com/software/mysql-tools/percona-toolkit>
• MySQL DBCompare <https://dev.mysql.com/doc/mysql-utilities/1.6/en/mysqldbcompare.html>
• SQL Server tablediff Utility <http://msdn.microsoft.com/en-US/library/ms162843.aspx>
• Red Gate SQL Data Compare <http://www.red-gate.com/products/sql-development/sql-data-
compare/>
• Spectral Core OmegaSync <http://www.spectralcore.com/omegasync/>,
• SQL Delta <http://www.sqldelta.com/>
• SQLite sqldiff <https://www.sqlite.org/sqldiff.html>
• AlfaAlfa SQL Server Comparison Tool <http://www.sql-server-tool.com/>
• SQLyog MySQL GUI <http://www.webyog.com/>
• xSQL Software Data Compare <http://www.xsql.com/products/sql_server_data_compare/>
TESTS
The paper reports numerous performance tests with PostgreSQL under various bandwidth
constraints.
Moreover, non regression tests are run over randomly generated tables when the software is
upgraded:
sanity - about 30 seconds & 30 runs
Run a comparison, synchronization & check for all databases combinaisons and all
working asynchronous queries and threading options.
fast - about 5 minutes & 360 runs
Run 12 tests similar to the previous one with varrying options (number of key columns,
number of value columns, aggregate function, checksum function, null handling, folding
factor, table locking or not...).
feature - about 5 minutes & 171 or 477 runs
Test various features: cc for checksum computation strategies, auto for trigger-
maintained checksums on PostgreSQL, pgcopy for PostgreSQL copy test, empty for corner
cases with empty tables, quote for table quoting, engine for InnoDB vs MyISAM MySQL
backends, width for large columns, nullkey for possible NULL values in keys, sqlite
for SQLite test, mylite for SQLite/MySQL mixed mode with some restrictions, pglite for
SQLite/PostgreSQL mixed mode with some restrictions.
release - about 20 minutes & 944 runs
This is feature with two table sizes, fast, and collisions to test possible hash
collisions.
hour - about 1 hour & 2880 runs
A combination of 8 fast validations with varrying table sizes and difference ratio
ranging from 0.1% to 99.9%.
full - about 6 hours & 16128 runs... seldom run
A combinatorial test involving numerous options: aggregation, checksums, null
handling, foldings, number of key and value attributes...
BUGS
All software have bugs. This is a software, hence it has bugs.
Reporting bugs is good practice, so tell me if you find one. If you have a fix, this is
even better!
The implementation does not do many sanity checks.
Although the algorithm can work with some normalized columns (say strings are trimmed,
lowercased, Unicode normalized...), the implementation may not work at all.
The script is really tested with integer and text types, issues may arise with other
types.
The script handles one table at a time. In order to synchronize several linked tables, you
must disable referential integrity checks, then synchronize each tables, then re-enable
the checks.
There is no real attempt at doing some sensible identifier quoting, although quotes
provided in the connection url are kept, so it may work after all for simple enough cases.
There is no neat user interfaces, this is a earthly command line tool. This is not a bug,
but a feature.
There are too many options.
Using another language such as Python for this application seems attractive, but there is
no cleanly integrated manual-page style support such as POD, and the documentation is 50%
of this script.
Mixed SQLite vs PostgreSQL or MySQL table comparison may not work properly in all cases,
because of SQLite dynamic type handling and reduced capabilities.
The script creates (temporary) tables on both sides for comparing the target tables: this
imply that you must be allowed to do that for the comparison... However, read-only
replicas do not allow creating objects, which mean that you cannot use pg_comparator to
compare table contents on a synchronized replica.
TODO
Allow larger checksum sizes.
Add an option to avoid IN (x,y,...) syntax, maybe with a temporary table to hold values
and use a JOIN on that. I'm not sure about the performance implications, though.
Allow generating the SQL update script without applying it.
Option to generate more compact updates, i.e. only update attributes with different
values.
VERSIONS
See web site <http://www.coelho.net/pg_comparator/> for the latest version. Although
versions are really managed with SVN, there is also a github repos
<https://github.com/zx80/pg_comparator>.
version 2.3.2 (r1594 on 2020-11-03)
Accept dash character ("-") in login and database names, submitted by Piotr Boniecki.
Fix quoting of values when synchronizing with copy, reported by Luis Gonzales
Sotelino. Add "module_pathname" to Postgres extension control file.
version 2.3.1 (r1582 on 2017-07-07)
Fix spelling errors in the documentation, reported by Bas Couwenberg. Fix
distribution "Makefile".
version 2.3.0 (r1569 on 2017-07-07)
Add new "INSTALL" Section. Turn cast, functions and aggregates into a PostgreSQL
extension. Fix "--where" handling when "--tcs" is used, reported by Kenneth Hammink.
Add "--pg-text-cast" option to work around missing implicit casts, issue reported by
Saulius Grigaitis. Documentation updates. The release validation was run
successfully on PostgreSQL 9.6.3 and MySQL 5.7.18.
version 2.2.6 (r1540 on 2015-04-18)
Fix some typos found by Lintian and pointed out by Ivan Mincik. Add support for FNV
(Fowler Noll Vo) version 1a inspired hash functions. Add option to skip inserts,
updates or deletes when synchronizing, which may be useful to deal with foreign keys,
issue pointed out by Graeme Bell. The release validation was run successfully on
PostgreSQL 9.4.1 and MySQL 5.5.41.
version 2.2.5 (r1512 on 2014-07-24)
Fix broken URL defaults to use UNIX sockets with an empty host name, per report by
Ivan Mincik. Fix "--where" condition handling with "--pg-copy" in corner cases. Do
not take execution timestamps when not required. Allow a larger number of differences
by default for small table comparisons. Add more sanity checks. Improve some error
messages. The release validation was run successfully on PostgreSQL 9.4b1 and MySQL
5.5.38.
version 2.2.4 (r1506 on 2014-07-13)
Add experimental support for using COPY instead of INSERT/UPDATE for PostgreSQL, in
chunks of size specified with option "--pg-copy", as suggested by Graeme Bell. Minor
fix when computing the maximum number of differences to report. The release
validation was run successfully on PostgreSQL 9.4b1 and MySQL 5.5.37.
version 2.2.3 (r1494 on 2014-04-19)
Improved documentation. Add "--unlogged" option to use unlogged tables. The release
validation was run successfully on PostgreSQL 9.3.4 and MySQL 5.5.35.
version 2.2.2 (r1485 on 2014-01-08)
Fix some warnings reported by Ivan Mincik. Minor doc changes. The release validation
was run successfully on PostgreSQL 9.3.2 and MySQL 5.5.34.
version 2.2.1 (r1480 on 2013-05-09)
Do not die on missing driver in URL, regression reported by Ivan Mincik. The release
validation was run successfully on PostgreSQL 9.2.4 and MySQL 5.5.31.
version 2.2.0 (r1473 on 2013-03-07)
Bug fix by Robert Coup, which was triggered on hash collisions (again). This bug was
introduced in 2.1.0 when getting rid of the key separator, and not caught by the
validation. Factor out database dependencies in a separate data structure, so that
adding new targets should be simpler in the future. Add SQLite support. Add
experimental Firebird support. Fix some warnings. Update "cksum8" function to
propagate the first checksum half into the computation of the second half. Improved
documentation. Improved validation, in particular with a collisions test. The
release and hour validations were run successfully on PostgreSQL 9.2.3 and MySQL
5.5.29.
version 2.1.2 (r1402 on 2012-10-28)
Fix an issue when table names were quoted, raised by Robert Coup. Improved
documentation, especially Section "SEE ALSO". More precise warning. Improved
validation. The release and hour validations were run successfully on PostgreSQL
9.2.1 and MySQL 5.5.27.
version 2.1.1 (r1375 on 2012-08-20)
Synchronization now handles possible NULLs in keys. Warn if key is nullable or not an
integer under "--use-key". Improved documentation, in particular non regression tests
are described. The release and hour validations were run successfully on PostgreSQL
9.1.4 and MySQL 5.5.24.
version 2.1.0 (r1333 on 2012-08-18)
Add "--tuple-checksum" and "--key-checksum" options so as to use existing possibly
trigger-maintained checksums in the target tables instead of computing them on the
fly. Add "--checksum-computation" option to control how the checksum table is built,
either "CREATE ... AS ..." or "CREATE ...; INSERT ...". For MySQL, rely directly on
the count returned by "CREATE ... AS" if available. Add "--lock" option for locking
tables, which is enabled when synchronizing. Improve asynchronous query handling,
especially when creating checksum tables and getting initial table counts, and in some
other cases. Remove redundant data transfers from checksum table under option
"--use-key". Get rid of the separator when retrieving keys of differing tuples. Note
that it is still used when computing checksums. Fix bug in bulk insert and delete key
recovery under option "--use-key". Fix potential bug in handling complex conditions
with "--where". Change default prefix to pgc_cmp so that it is clearer that it
belongs to pg_comparator. Fix initial count query which was not started
asynchronously under "--tcs". Ensure that if not null detection is in doubt, a column
is assumed nullable and thus is coalesced. Fix query counters so that they are shared
under "--threads". Fix threading for explicit cleanup phase. Warn if nullable key
attributes are encountered. Make default driver for second connection be the same as
first. Rename option "--assume-size" as "--size". Add short documentation about
"--debug". Multiple "--debug" set DBI tracing levels as well. Improve the difference
computation code so that the algorithm is more readable. Improve documentation. Add
and improve comments in the code. The release and hour validations were run
successfully on PostgreSQL 9.1.4 and MySQL 5.5.24.
version 2.0.1 (r1159 on 2012-08-10)
Add "--source-*" options to allow taking over DBI data source specification. Change
default aggregate to "sum" so that it works as expected by default when mixing
PostgreSQL and MySQL databases. The results are okay with "xor", but more paths than
necessary were investigated, which can unduly trigger the max report limit. Improved
documentation. In particular default option settings are provided systematically. The
fast validation was run successfully on PostgreSQL 9.1.4 and MySQL 5.5.24.
version 2.0.0 (r1148 on 2012-08-09)
Use asynchronous queries so as to provide some parallelism to the comparison without
the issues raised by threads. It is enabled by default and can be switched off with
option "--no-asynchronous". Allow empty hostname specification in connection URL to
use a UNIX socket. Improve the documentation, in particular the analysis section.
Fix minor typos in the documentation. Add and fix various comments in the code. The
fast validation was run successfully on PostgreSQL 9.1.4 and MySQL 5.5.24.
version 1.8.2 (r1117 on 2012-08-07)
Bug fix in the merge procedure by Robert Coup that could result in some strange
difference reports in corner cases, when there were collisions on the kcs in the
initial checksum table. Fix broken synchronization with '|' separator, raised by
Aldemir Akpinar. Warn about possible issues with large objects. Add
"--long-read-len" option as a possible way to circumvent such issues. Try to detect
these issues. Add a counter for metadata queries. Minor documentation improvements
and fixes.
version 1.8.1 (r1109 on 2012-03-24)
Change default separator again, to '|'. Fix "--where" option mishandling when
counting, pointed out by Enrique Corona.
Post release note: the synchronisation is broken with the default separator in 1.8.1,
do not use it, or use --separator='%'.
version 1.8.0 (r1102 on 2012-01-08)
Change default separator to '%', which seems less likely, after issues run into by
Emanuel Calvo. Add more pointers and documentation.
version 1.7.0 (r1063 on 2010-11-12)
Improved documentation. Enhancement and fix by Maxim Beloivanenko: handle quoted
table and attribute names; Work around bulk inserts and deletes which may be
undefined. More stats, more precise, possibly in CSV format. Add timeout and use-
null options. Fix subtle bug which occurred sometimes on kcs collisions in table
T(0).
version 1.6.1 (r754 on 2010-04-16)
Improved documentation. Key and columns now defaults to primary key and all other
columns of table in first connection. Password can be supplied from the environment.
Default password for second connection always set depending on the first. Add max
ratio option to express the relative maximum number of differences. Compute grouping
masks by shifting left instead of right by default (that is doing a divide instead of
a modulo). Threads now work a little, although it is still quite experimental. Fix a
bug that made perl see differing checksum although they were equal, in some unclear
conditions.
version 1.6.0 (r701 on 2010-04-03)
Add more functions (MD5, SUM) and sizes (2, 4, 8). Remove template parameterization
which is much too fragile to expose. Add a wrapping transaction which may speed up
things a little. Implementation for MySQL, including synchronizing heterogeneous
databases. Improved documentation. Extensive validation/non regression tests.
version 1.5.2 (r564 on 2010-03-22)
More documentation. Improved connection parsing with more sensible defaults. Make
the mask computation match its above documentation with a bottom-up derivation,
instead of a simpler top-down formula which results in bad performances when a power
of the factor is close to the size (as pointed out in Benjamin Mead Vandiver's PhD).
This bad mask computation was introduced somehow between 1.3 and 1.4 as an attempt at
simplifying the code.
version 1.5.1 (r525 on 2010-03-21)
More documentation. Add "--expect" option for non regression tests.
version 1.5.0 (r511 on 2010-03-20)
Add more links. Fix so that with a key only (i.e. without additional columns),
although it could be optimized further in this case. Integrate patch by Erik
Aronesty: More friendly "connection parser". Add synchronization option to actually
synchronize the data.
version 1.4.4 (r438 on 2008-06-03)
Manual connection string parsing.
version 1.4.3 (r424 on 2008-02-17)
Grumble! wrong tar pushed out.
version 1.4.2 (r421 on 2008-02-17)
Minor makefile fix asked for by Roberto C. Sanchez.
version 1.4.1 (r417 on 2008-02-14)
Minor fix for PostgreSQL 8.3 by Roberto C. Sanchez.
version 1.4 (r411 on 2007-12-24)
Port to PostgreSQL 8.2. Better documentation. Fix mask bug: although the returned
answer was correct, the table folding was not. DELETE/INSERT messages exchanged so as
to match a 'sync' or 'copy' semantics, as suggested by Erik Aronesty.
version 1.3 (r239 on 2004-08-31)
Project moved to PG Foundry. Use cksum8 checksum function by default. Minor doc
updates.
version 1.2 (r220 on 2004-08-27)
Added "--show-all-keys" option for handling big chunks of deletes or inserts.
version 1.1 (r210 on 2004-08-26)
Fix algorithmic bug: checksums must also include the key, otherwise exchanged data
could be not detected if the keys were to be grouped together. Algorithmic section
added to manual page. Thanks to Giuseppe Maxia who asked for it. Various code
cleanups.
version 1.0 (r190 on 2004-08-25)
Initial revision.
COPYRIGHT
Copyright (c) 2004-2020, Fabien Coelho <pg dot comparator at coelho dot net>
<http://www.coelho.net/>
This software is distributed under the terms of the BSD Licence. Basically, you can do
whatever you want, but you have to keep the license and I'm not responsible for any
consequences. Beware, you may lose your data, your friends or your hairs because of this
software! See the LICENSE file enclosed with the distribution for details.
If you are very happy with this software, I would appreciate a postcard saying so. See my
webpage for current address.