NAME

       sand_uncompress_reads - uncompress sequence data

SYNOPSIS

       sand_uncompress_reads [-qvh] [infile] [outfile]

DESCRIPTION

       sand_uncompress_reads  reads  sequence  data  in  compressed  FASTA  format  (cfa) used by
       sand_filter_master(1) and sand_align_master(1).  and produces output in the standard FASTA
       format.

       If  the  output  file  is omitted, standard output is used.  if the input file is omitted,
       standard input is used.  After completing the compression,  this  program  will  output  a
       summary line of sequences and bytes compressed.

OPTIONS

        -q    Quiet mode: suppress summary line.

        -h    Display version information.

        -v    Show help text.

EXIT STATUS

       On success, returns zero.  On failure, returns non-zero.

EXAMPLES

       To uncompress mydata.cfa into mydata.fasta:

               % sand_uncompress_reads mydata.cfa mydata.fa

COPYRIGHT

       The  Cooperative Computing Tools are Copyright (C) 2005-2019 The University of Notre Dame.
       This software is distributed under the GNU General Public License.  See the  file  COPYING
       for details.

SEE ALSO

       •   Cooperative Computing Tools Documentation

       •   SAND User Manual

       •   sand_filter_master(1)            sand_filter_kernel(1)            sand_align_master(1)
           sand_align_kernel(1)          sand_compress_reads(1)          sand_uncompress_reads(1)
           work_queue_worker(1)