NAME

       tree-tool - Perform various operations on Newick trees.

SYNOPSIS

       tree-tool tree-file [OPTIONS]

DESCRIPTION

       Perform various operations on Newick trees.

GENERAL OPTIONS:

       -h, --help
              produce help message

       -V, --verbose
              Output more log messages on stderr.

MODIFICATION OPTIONS:

       --prune arg
              Comma-separated taxa to remove

       --resolve
              Comma-separated taxa to remove

       --remove-root-branch
              Remove single branch from root.

       --remove-root-branches
              Ensure root is not a tip.

       --remove-knuckles
              Remove degree-2 nodes.

       --scale arg
              Scale branch-lengths by factor

       --strip-internal-names
              Remove internal node names

       --name-all-nodes
              Add node names

OUTPUT OPTIONS:

       --length
              Report the total tree length

       --diameter
              Report the total tree length

REPORTING BUGS:

       BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

       Please send bug reports to <bali-phy-users@googlegroups.com>.

AUTHORS

       Benjamin Redelings.

                                             Feb 2018                                tree-tool(1)