NAME

       CAT - tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

SYNOPSIS

       CAT (prepare | contigs | bin | bins | add_names | summarise) [-v / --version] [-h / --help]

DESCRIPTION

       Run Contig Annotation Tool (CAT) or Bin Annotation Tool (BAT).

OPTIONS

   Required choice:
       prepare
              Download database files and construct databases.

       contigs
              Run CAT.

       bin    Run BAT on a single bin.

       bins   Run BAT on a set of bins.

       add_names
              Add taxonomic names to CAT or BAT output files.

       summarise
              Summarise a named CAT or BAT classification file.

   Optional arguments:
       -v, --version
              Print version information and exit.

       -h, --help
              Show this help message and exit.

AUTHOR

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

CAT 5.0.4                                           May 2020                                              CAT(1)