Provided by: cpl-plugin-fors-doc_5.5.7+dfsg-2build1_all 
NAME
fors_detect_spectra - Detect MOS/MXU spectra on CCD
SYNOPSIS
esorex fors_detect_spectra [OPTIONS] FILE.sof
DESCRIPTION
This recipe is used to detect and locate MOS/MXU slit spectra on the CCD, applying a pattern-matching
algorithm. The input spectral exposure must contain spectra with the dispersion direction approximately
horizontal, with blue on the left and red on the right. Use recipe fors_wave_calib_lss for LSS data, or
for MOS/MXU data where all slits have the same offset.
The rows of the input spectral exposure are processed separately, one by one. First, the background
continuum is removed. Second, a list of positions of reference lines candidates is created. Only peaks
above a given threshold (specified by the parameter --peakdetection) are selected.
Third, the pattern-matching task selects from the found peaks the ones corresponding to the reference
lines, listed in the input line catalog, associating them to the appropriate wavelengths. The ensuing
polynomial fit is used to locate the central wavelength of the applied grism along each image row. The
contributions from all rows form an image of the location of all spectra, that can be used as a starting
point for the proper modeling of the optical and spectral distortions. For more details on this reduction
strategy please refer to the FORS Pipeline User´s Manual.
Note that specifying an input GRISM_TABLE will set some of the recipe configuration parameters to default
values valid for a particular grism.
Again, see the pipeline manual for more details.
In the table below the MXU acronym can be alternatively read as MOS.
Input files:
DO category: Type: Explanation: Required:
LAMP_UNBIAS_MXU Calib Bias subtracted arc Y
MASTER_LINECAT Calib Line catalog Y
GRISM_TABLE Calib Grism table .
Output files:
DO category: Data type: Explanation:
SLIT_MAP_MXU FITS image Map of central wavelength on CCD
SLIT_LOCATION_DETECT_MXU FITS table Slits positions on CCD
SPECTRA_DETECTION_MXU FITS image Check of preliminary detection
OPTIONS
--dispersion <float>
Expected spectral dispersion (Angstrom/pixel) (float; default: 0.0). The full name of this option
for the EsoRex configuration file is fors.fors_detect_spectra.dispersion [default = 0.0].
--peakdetection <float>
Initial peak detection threshold (ADU) (float; default: 0.0). The full name of this option for the
EsoRex configuration file is fors.fors_detect_spectra.peakdetection [default = 0.0].
--wdegree <int>
Degree of wavelength calibration polynomial (int; default: 0). The full name of this option for
the EsoRex configuration file is fors.fors_detect_spectra.wdegree [default = 0].
--wradius <int>
Search radius if iterating pattern-matching with first-guess method (int; default: 4). The full
name of this option for the EsoRex configuration file is fors.fors_detect_spectra.wradius [default
= 4].
--wreject <float>
Rejection threshold in dispersion relation fit (pixel) (float; default: 0.7). The full name of
this option for the EsoRex configuration file is fors.fors_detect_spectra.wreject [default = 0.7].
--wcolumn <str>
Name of line catalog table column with wavelengths (str; default: ´WLEN´). The full name of this
option for the EsoRex configuration file is fors.fors_detect_spectra.wcolumn [default = WLEN].
--startwavelength <float>
Start wavelength in spectral extraction (float; default: 0.0). The full name of this option for
the EsoRex configuration file is fors.fors_detect_spectra.startwavelength [default = 0.0].
--endwavelength <float>
End wavelength in spectral extraction (float; default: 0.0). The full name of this option for the
EsoRex configuration file is fors.fors_detect_spectra.endwavelength [default = 0.0].
--slit_ident <bool>
Attempt slit identification for MOS or MXU (bool; default: True). The full name of this option for
the EsoRex configuration file is fors.fors_detect_spectra.slit_ident [default = True].
Note that it is possible to create a configuration file containing these options, along with suitable
default values. Please refer to the details provided by the 'esorex --help' command.
SEE ALSO
The full documentation for the fors pipeline can be downloaded as a PDF file using the following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/fors/fors-pipeline-manual-4.9.pdf
An overview over the existing ESO pipelines can be found on the web page
https://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See
https://packages.python.org/python-cpl/index.html for further information.
The other recipes of the fors pipeline are fors_align_sky(7), fors_align_sky_lss(7), fors_bias(7),
fors_calib(7), fors_config(7), fors_dark(7), fors_detect_objects(7), fors_extract(7),
fors_extract_objects(7), fors_extract_slits(7), fors_flatfield(7), fors_img_science(7),
fors_img_screen_flat(7), fors_img_sky_flat(7), fors_normalise_flat(7), fors_photometry(7),
fors_pmos_calib(7), fors_pmos_extract(7), fors_pmos_science(7), fors_remove_bias(7), fors_resample(7),
fors_science(7), fors_spec_mflat(7), fors_subtract_sky(7), fors_subtract_sky_lss(7), fors_sumflux(7),
fors_trace_flat(7), fors_wave_calib(7), fors_wave_calib_lss(7), fors_zeropoint(7)
VERSION
fors_detect_spectra 5.5.7
AUTHOR
Carlo Izzo <usd-help@eso.org>
BUG REPORTS
Please report any problems to usd-help@eso.org. Alternatively, you may send a report to the ESO User
Support Department <usd-help@eso.org>.
LICENSE
This file is currently part of the FORS Instrument Pipeline Copyright (C) 2002-2010 European Southern
Observatory
This program is free software; you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write
to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA