NAME

       openms-doc - library for LC/MS data management and analysis - documentation

DESCRIPTION

       This  manual  page  documents  briefly the openms-doc package that brings a full set of documentation and
       tutorials to the OpenMS software framework. OpenMS offers an infrastructure for the development  of  mass
       spectrometry-related  software and powerful 2D and 3D visualization solutions. OpenMS offers analyses for
       various quantitation protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It  provides
       build-in  algorithms  for de-novo identification and database search, as well as adapters to other state-
       of-the art tools like X!Tandem, Mascot, OMSSA… OpenMS supports the Proteomics Standard  Initiative  (PSI)
       formats  for MS data and supports easy integration of tools into workflow engines like Knime, Galaxy, WS-
       Pgrade, and TOPPAS via the TOPPtools concept and a unified parameter handling.

BIBLIOGRAPHICAL REFERENCE TO BE CITED

       Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange,  Nico  Pfeifer,
       Ole  Schulz-Trieglaff,  Alexandra  Zerck,  Knut  Reinert, and Oliver Kohlbacher (2008)  OpenMS – an Open-
       Source Software Framework for Mass Spectrometry.  BMC Bioinformatics, 9:163. doi:10.1186/1471-2105-9-163.

SEE ALSO

       libopenms(3), topp(1), openms-common(7), openms(7),

AUTHOR

       This manual page was written by Filippo Rusconi <lopippo@debian.org>.  Permission  is  granted  to  copy,
       distribute  and/or  modify  this  document  under the terms of the GNU General Public License, Version 3,
       published by the Free Software Foundation.

        On a Debian system the complete text of the GNU General Public License version 3 can  be  found  in  the
       file `/usr/share/common-licenses/GPL-3'.

                                                  November 2012                                    OPENMS-DOC(7)