Provided by: cpl-plugin-xshoo-doc_3.5.3+dfsg-1build4_all
NAME
xsh_scired_ifu_offset_drl - Reduce science exposure in IFU configuration and on/off mode
SYNOPSIS
esorex xsh_scired_ifu_offset_drl [OPTIONS] FILE.sof
DESCRIPTION
This recipe reduces science exposure in IFU configuration and on/off mode Input Frames : - A set of 2xn Science frames, Tag = OBJECT_IFU_OFFSET_arm, SKY_IFU_arm - A spectral format table (Tag = SPECTRAL_FORMAT_TAB_arm) - A master flat frame (Tag = MASTER_FLAT_IFU_arm) - An order table frame(Tag = ORDER_TABLE_EDGES_IFU_arm) - 3 wave solution frames, one per slitlet (Tag = WAVE_TAB_ARC_IFU_slitlet_arm) where ´slitlet´ is DOWN, CEN or UP - [OPTIONAL] A dispersion table (Tag = DISP_TAB_IFU_arm) - [OPTIONAL] A badpixel map (Tag = BADPIXEL_MAP_arm) Products : - 3 Spectrum order tables 2D (1 per slitlet), PRO.CATG=ORDER2D_slitlet_IFU_arm - 3 Spectrum order tables 1D (1 per slitlet), PRO.CATG=ORDER1D_slitlet_IFU_arm - 3 Spectrum merge tables 2D (1 per slitlet), PRO.CATG=MERGE2D_slitlet_IFU_arm - 3 Spectrum merge tables 1D (1 per slitlet), PRO.CATG=MERGE1D_slitlet_IFU_arm - 1 Spectrum merge 3D, PRO.CATG=MERGE3D_IFU_arm
OPTIONS
--keep-temp <str> If ´no´, temporary files are deleted. (str; default: ´no´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.keep-temp [default = no]. --debug-level <str> Additional xshooter debug level. One of ´none´, ´low´, ´medium´, ´high´ (str; default: ´none´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.debug-level [default = none]. --time-stamp <bool> Add timestamp to product file name. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.time-stamp [default = False]. --decode-bp <int> Integer representation of the bits to be considered bad when decoding the bad pixel mask pixel values. Most frequent codes relevant for the user: 0: good pixel, 8: pick-up noise, 16: cosmic-ray removed, 32: cosmic-ray unremoved, 128: calibration file defect, 256: hot pixel, 512: dark pixel, 4096: A/D converted saturation, 32768: non linear pixel, 1048576: extrapolated flux in NIR, 4194304: Interpolated flux during extraction. (int; default: 2144337919). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.decode-bp [default = 2144337919]. --pre-overscan-corr <int> pre-overscan correction. 0: no correction 1: mean overscan correction 2: mean prescan correction 3: (mean pre+mean overscan)/2 correction (int; default: 1). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.pre-overscan-corr [default = 1]. --stack-method <str> Method used to build master frame. (str; default: ´median´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.stack-method [default = median]. --klow <float> Kappa used to clip low level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.klow [default = 5.0]. --khigh <float> Kappa used to clip high level values, when method is set to ´mean´ (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.khigh [default = 5.0]. --crh-clip-kappa <float> Kappa value in sigma clipping during CRH rejection using multiple frames (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.crh-clip-kappa [default = 5.0]. --crh-clip-niter <int> Number of iterations in sigma clipping during CRH rejection using multiple frames (int; default: 5). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.crh-clip-niter [default = 5]. --crh-clip-frac <float> Minimal ratio of points accepted / total in sigma clipping during CRH rejection using multiple frames (float; default: 0.7). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.crh-clip-frac [default = 0.7]. --background-edges-margin <int> X margin to order edge to define background sampling points (int; default: 1). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.background-edges-margin [default = 1]. --background-poly-deg-y <int> Poly mode fit deg along Y. (int; default: 9). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.background-poly-deg-y [default = 9]. --background-poly-deg-x <int> Poly mode fit deg along X. (int; default: 9). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.background-poly-deg-x [default = 9]. --background-poly-kappa <float> Poly mode kappa value of kappa-sigma-clip outliers removal. (float; default: 10.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.background-poly-kappa [default = 10.0]. --removecrhsingle-sigmalim <float> Poisson fluctuation threshold to flag CRHs (see van Dokkum, PASP,113,2001,p1420-27) (float; default: 5.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.removecrhsingle-sigmalim [default = 5.0]. --removecrhsingle-flim <float> Minimum contrast between the Laplacian image and the fine structure image that a point must have to be flagged as CRH. (see van Dokkum, PASP,113,2001,p1420-27) (float; default: 2.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.removecrhsingle-flim [default = 2.0]. --removecrhsingle-niter <int> Max number of iterations (int; default: 4). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.removecrhsingle-niter [default = 4]. --rectify-kernel <str> Name of the Interpolation Kernel Used. Possible values are: tanh, sinc, sinc2, lanczos, hamming, hann. (str; default: ´tanh´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.rectify-kernel [default = tanh]. --rectify-radius <float> Rectify Interpolation radius [bin units]. (float; default: 2.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.rectify-radius [default = 2.0]. --rectify-bin-lambda <float> Wavelength step in the output spectrum [nm] (float; default: 0.06). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.rectify-bin-lambda [default = 0.06]. --rectify-bin-slit <float> Spatial step along the slit in the output spectrum [arcsec] (float; default: 0.21). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.rectify-bin-slit [default = 0.21]. --localize-method <str> Localization method (MANUAL, MAXIMUM, GAUSSIAN) used to detect the object centroid and height on the slit (str; default: ´MANUAL´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-method [default = MANUAL]. --localize-chunk-nb <int> Number of chunks in the full spectrum to localize the object (int; default: 10). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-chunk-nb [default = 10]. --localize-thresh <float> Threshold relative to the peak intensity below which the edges of the object are detected for MAXIMUM localization (float; default: 0.1). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-thresh [default = 0.1]. --localize-deg-lambda <int> Degree in lambda in the localization polynomial expression slit=f(lambda), used only for MAXIMUM and GAUSSIAN (int; default: 0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-deg-lambda [default = 0]. --localize-slit-position <float> Object position on the slit for MANUAL localization [arcsec] (float; default: 0.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-slit-position [default = 0.0]. --localize-slit-hheight <float> Object half height on the slit for MANUAL localization [arcsec] (float; default: 2.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-slit-hheight [default = 2.0]. --localize-kappa <float> Kappa value for sigma clipping in the localization polynomial fit (float; default: 3.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-kappa [default = 3.0]. --localize-niter <int> Number of iterations for sigma clipping in the localization polynomial fit (int; default: 3). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-niter [default = 3]. --localize-use-skymask <bool> TRUE if we want to mask sky lines using SKY_LINE_LIST file. (bool; default: False). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.localize-use-skymask [default = False]. --extract-method <str> Method used for extraction (LOCALIZATION, NOD) (str; default: ´LOCALIZATION´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.extract-method [default = LOCALIZATION]. --stdextract-interp-hsize <int> Half size of mask used to define object cross order profile (int; default: 30). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.stdextract-interp-hsize [default = 30]. --shift-offsettab-low <float> Global shift of the lower slitlet slit positions, relative to the central one[arcsec]. (float; default: 0.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.shift-offsettab-low [default = 0.0]. --shift-offsettab-up <float> Global shift of the upper slitlet slit positions, relative to the central one[arcsec]. (float; default: 0.0). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.shift-offsettab-up [default = 0.0]. --compute-map <bool> if TRUE recompute (wave and slit) maps from the dispersion solution. If sky-subtract is set to TRUE this must be set to TRUE. (bool; default: True). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.compute-map [default = True]. --check-afc <bool> Input AFC corrected model/wave solution and science frame check.If TRUE the recipe verify that the input mode/wave solution is AFC corrected, its INS.OPTIi.NAME is ´Pin_0.5 ´, and its OBS.ID and OBS.TARG.NAME values matches with the corresponding values of the science frame. (bool; default: True). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.check-afc [default = True]. --flat-method <str> method adopted for flat: (str; default: ´master´). The full name of this option for the EsoRex configuration file is xsh.xsh_scired_ifu_offset_drl.flat-method [default = master]. Note that it is possible to create a configuration file containing these options, along with suitable default values. Please refer to the details provided by the 'esorex --help' command.
SEE ALSO
The full documentation for the xshoo pipeline can be downloaded as a PDF file using the following URL: ftp://ftp.eso.org/pub/dfs/pipelines/xshoo/xshoo-pipeline-manual-12.1.pdf An overview over the existing ESO pipelines can be found on the web page https://www.eso.org/sci/software/pipelines/. Basic documentation about the EsoRex program can be found at the esorex (1) man page. It is possible to call the pipelines from python using the python-cpl package. See https://packages.python.org/python-cpl/index.html for further information. The other recipes of the xshoo pipeline are xsh_2dmap(7), xsh_cfg_recover(7), xsh_flexcomp(7), xsh_geom_ifu(7), xsh_lingain(7), xsh_mbias(7), xsh_mdark(7), xsh_mflat(7), xsh_orderpos(7), xsh_predict(7), xsh_respon_slit_nod(7), xsh_respon_slit_offset(7), xsh_respon_slit_stare(7), xsh_scired_ifu_offset(7), xsh_scired_ifu_stare(7), xsh_scired_ifu_stare_drl(7), xsh_scired_slit_nod(7), xsh_scired_slit_offset(7), xsh_scired_slit_stare(7), xsh_util_physmod(7), xsh_wavecal(7)
VERSION
xsh_scired_ifu_offset_drl 3.5.3
AUTHOR
P.Goldoni, L.Guglielmi, R. Haigron, F. Royer <amodigli@eso.org>
BUG REPORTS
Please report any problems to amodigli@eso.org. Alternatively, you may send a report to the ESO User Support Department <usd-help@eso.org>.
LICENSE
This file is part of the X-shooter Instrument Pipeline Copyright (C) 2006 European Southern Observatory This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA