NAME

       xsh_util_physmod - Generate physical model products

SYNOPSIS

       esorex xsh_util_physmod [OPTIONS] FILE.sof

DESCRIPTION

       This  recipe generates the theoretical and the spectral format tables.  and possibly the model based wave
       map.

       The sof file contains the names of the input FITS file tagged with XSH_MOD_CFG_TAB_arm.

       tagged with ARC_LINE_LIST_arm.

       This  recipe  has  the  following  products:  Model  order  traces  for  nine  pinholes   (PRO   CATG   =
       THEO_TAB_MULT_arm)  Model order traces for nine pinholes (PRO CATG = THEO_TAB_IFU_arm) Model order traces
       for  central  pinhole  (PRO   CATG   =   THEO_TAB_SING_arm)   Spectral   format   table   (PRO   CATG   =
       SPECTRAL_FORMAT_TAB_arm)  Wave  map  image  (PRO  CATG  =  WAVE_MAP_arm)  Slit  map  image  (PRO  CATG  =
       SLIT_MAP_arm)

OPTIONS

       --keep-temp <str>
              If ´no´, temporary files are deleted. (str; default: ´no´). The full name of this option  for  the
              EsoRex configuration file is xsh.xsh_util_physmod.keep-temp [default = no].

       --debug-level <str>
              Additional  xshooter  debug  level. One of ´none´, ´low´, ´medium´, ´high´ (str; default: ´none´).
              The full name of this option for the EsoRex configuration file is xsh.xsh_util_physmod.debug-level
              [default = none].

       --time-stamp <bool>
              Add  timestamp  to product file name. (bool; default: False). The full name of this option for the
              EsoRex configuration file is xsh.xsh_util_physmod.time-stamp [default = False].

       --decode-bp <int>
              Integer representation of the bits to be considered bad when decoding the  bad  pixel  mask  pixel
              values.    Most  frequent  codes relevant for the user:   0: good pixel,   8: pick-up noise,   16:
              cosmic-ray removed,   32: cosmic-ray unremoved,   128: calibration file defect,  256:  hot  pixel,
              512:   dark  pixel,    4096:  A/D  converted  saturation,  32768:  non  linear  pixel,    1048576:
              extrapolated  flux  in  NIR,  4194304:  Interpolated  flux  during  extraction.   (int;   default:
              2144337919).   The   full   name   of   this   option   for   the  EsoRex  configuration  file  is
              xsh.xsh_util_physmod.decode-bp [default = 2144337919].

       --binx <int>
              X binning  (int; default: 1). The full name of this option for the EsoRex  configuration  file  is
              xsh.xsh_model.binx [default = 1].

       --biny <int>
              X  binning   (int;  default: 1). The full name of this option for the EsoRex configuration file is
              xsh.xsh_model.biny [default = 1].

       --spectral-format-tab <bool>
              Generate spectral format table   (bool; default: False). The full name  of  this  option  for  the
              EsoRex configuration file is xsh.xsh_model.spectral_format_tab [default = False].

       --wavemap <bool>
              Generate slit and wave maps (time consuming)  (bool; default: False). The full name of this option
              for the EsoRex configuration file is xsh.xsh_model.wavemap [default = False].

       Note that it is possible to create a configuration file containing these  options,  along  with  suitable
       default values. Please refer to the details provided by the 'esorex --help' command.

SEE ALSO

       The full documentation for the xshoo pipeline can be downloaded as a PDF file using the following URL:

              ftp://ftp.eso.org/pub/dfs/pipelines/xshoo/xshoo-pipeline-manual-12.1.pdf

       An    overview    over    the    existing    ESO    pipelines    can   be   found   on   the   web   page
       https://www.eso.org/sci/software/pipelines/.

       Basic documentation about the EsoRex program can be found at the esorex (1) man page.

       It  is  possible  to  call   the   pipelines   from   python   using   the   python-cpl   package.    See
       https://packages.python.org/python-cpl/index.html for further information.

       The   other  recipes  of  the  xshoo  pipeline  are  xsh_2dmap(7),  xsh_cfg_recover(7),  xsh_flexcomp(7),
       xsh_geom_ifu(7),   xsh_lingain(7),    xsh_mbias(7),    xsh_mdark(7),    xsh_mflat(7),    xsh_orderpos(7),
       xsh_predict(7),      xsh_respon_slit_nod(7),     xsh_respon_slit_offset(7),     xsh_respon_slit_stare(7),
       xsh_scired_ifu_offset(7),             xsh_scired_ifu_offset_drl(7),              xsh_scired_ifu_stare(7),
       xsh_scired_ifu_stare_drl(7), xsh_scired_slit_nod(7), xsh_scired_slit_offset(7), xsh_scired_slit_stare(7),
       xsh_wavecal(7)

VERSION

       xsh_util_physmod 3.5.3

AUTHOR

       Andrea Modigliani <amodigli@eso.org>

BUG REPORTS

       Please report any problems to amodigli@eso.org. Alternatively, you may send a  report  to  the  ESO  User
       Support Department <usd-help@eso.org>.

LICENSE

       This file is part of the X-shooter Instrument Pipeline Copyright (C) 2006 European Southern Observatory

       This  program  is  free  software;  you  can  redistribute it and/or modify it under the terms of the GNU
       General Public License as published by the Free Software Foundation; either version 2 of the License,  or
       (at your option) any later version.

       This  program  is  distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
       the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General  Public
       License for more details.

       You  should have received a copy of the GNU General Public License along with this program; if not, write
       to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA