oracular (1) gffutils-cli-create.1.gz

NAME

       gffutils-cli_create - Create a database

DESCRIPTION

       usage: gffutils-cli create [-h] [-o OUTPUT] [-f] [-q] [-m MERGE]

       [--disable-infer-genes]
              [--disable-infer-transcripts] filename

       Create a database.

   positional arguments:
       filename
              GFF or GTF file to use

   options:
       -h, --help
              show this help message and exit

       -o OUTPUT, --output OUTPUT
              Database to create. Default is to append ".db" to the end of the input filename (default: -)

       -f, --force
              Overwrite an existing database (default: False)

       -q, --quiet
              Suppress the reporting of timing information when creating the database (default: False)

       -m MERGE, --merge MERGE
              Merge strategy to be used if if duplicate IDs are found. (default: 'merge')

       --disable-infer-genes
              Disable  inferring  of  gene  extents  for GTF files. Use this if your GTF file already has "gene"
              featuretypes (default: False)

       --disable-infer-transcripts
              Disable inferring of transcript extents for GTF files.  Use this if  your  GTF  file  already  has
              "transcript" featuretypes (default: False)