Provided by: phyx_1.3.1+ds-2build2_amd64 
NAME
pxrecode - nucleotide sequence recoding
SYNOPSIS
pxrecode [OPTIONS]...
DESCRIPTION
Nucleotide sequence recoding. This will take fasta, fastq, phylip, and nexus formats from a file or
STDIN.
OPTIONS
-s, --seqf=FILE
input sequence file, STDIN otherwise
-r, --recode=STRING
string identifying recoding scheme (default: RY)
Supported recodings (use any valid combination):
R = A|G Y = C|T S = C|G W = A|T M = A|C K = G|T B = C|G|T D = A|G|T H = A|C|T V = A|C|G
-o, --outf=FILE
output sequence file, STOUT otherwise
-h, --help
display this help and exit
-V, --version
display version and exit
-C, --citation
display phyx citation and exit
CITATION
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR
Written by Joseph W. Brown
REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page:
<https://github.com/FePhyFoFum/phyx>
COPYRIGHT
Copyright © 2013-2021 FePhyFoFum License GPLv3