oracular (3) Bio::Tradis.3pm.gz
NAME
Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308
VERSION
version 1.4.5
SYNOPSIS
Bio-Tradis provides functionality to: • detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags • add the tags to the reads - Bio::Tradis::AddTagsToSeq • filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags • remove tags - Bio::Tradis::RemoveTags • map to a reference genome - Bio::Tradis::Map • create an insertion site plot file - Bio::Tradis::TradisPlot Most of these functions are available as standalone scripts or as perl modules.
AUTHOR
Carla Cummins <path-help@sanger.ac.uk>
COPYRIGHT AND LICENSE
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute. This is free software, licensed under: The GNU General Public License, Version 3, June 2007