oracular (3) Bio::Matrix::IO::phylip.3pm.gz

NAME

       Bio::Matrix::IO::phylip - A parser for PHYLIP distance matricies

SYNOPSIS

         use Bio::Matrix::IO;
         my $parser = Bio::Matrix::IO->new(-format   => 'phylip',
                                          -file     => 't/data/phylipdist.out');
         my $matrix = $parser->next_matrix;

DESCRIPTION

       This is a parser for PHYLIP distance matrix output.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

       Email jason-at-bioperl-dot.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Matrix::IO::phylip->new();
        Function: Builds a new Bio::Matrix::IO::phylip object
        Returns : an instance of Bio::Matrix::IO::phylip
        Args    :

   next_matrix
        Title   : next_matrix
        Usage   : my $matrix = $parser->next_matrix
        Function: Get the next result set from parser data
        Returns : L<Bio::Matrix::PhylipDist>
        Args    : none

   write_matrix
        Title   : write_matrix
        Usage   : $matio->write_matrix($matrix)
        Function: Write out a matrix in the phylip distance format
        Returns : none
        Args    : L<Bio::Matrix::PhylipDist>