oracular (3) Bio::Tools::Run::AnalysisFactory::soap.3pm.gz

NAME

       Bio::Tools::Run::AnalysisFactory::soap - A SOAP-based access to the list of analysis tools

SYNOPSIS

       Do not use this object directly, it is recommended to access it and use it through the
       Bio::Tools::Run::AnalysisFactory module:

         use Bio::Tools::Run::AnalysisFactory;
         my $list = Bio::Tools::Run::AnalysisFactory->new(-access => 'soap')
            ->available_analyses;
         print join ("\n", @$list) . "\n";

DESCRIPTION

       All public methods are documented in the interface module "Bio::Factory::AnalysisI".

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         http://redmine.open-bio.org/projects/bioperl/

AUTHOR

       Martin Senger (martin.senger@gmail.com)

COPYRIGHT

       Copyright (c) 2003, Martin Senger and EMBL-EBI.  All Rights Reserved.

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.

DISCLAIMER

       This software is provided "as is" without warranty of any kind.

SEE ALSO

       •   http://www.ebi.ac.uk/soaplab/Perl_Client.html

BUGS AND LIMITATIONS

       None known at the time of writing this.

APPENDIX

       The main documentation details are in "Bio::Factory::AnalysisI".

   _initialize
        Usage   : my $factory = Bio::Tools::Run::AnalysisFactory->new(@args);
                  (_initialize is internally called from the 'new()' method)
        Returns : nothing interesting
        Args    : This module recognises and uses following arguments:
                    -location
                    -httpproxy
                    -soap
                  Additionally, the main module Bio::Tools::Run::AnalysisFactory
                  recognises also:
                    -access

       It populates calling object with the given arguments, and then - for some attributes and only if they are
       not yet populated - it assigns some default values.

       This is an actual new() method (except for the real object creation and its blessing which is done in the
       parent class Bio::Root::Root in method _create_object).

       Note that this method is called always as an object method (never as a class method) - and that the
       object who calls this method may already be partly initiated (from Bio::Tools::Run::AnalysisFactory::new
       method); so if you need to do some tricks with the 'class invocation' you need to change
       Bio::Tools::Run::AnalysisFactory new method, not this one.

       -location
           A URL (also called an endpoint) defining where is located a Web Service functioning for this object.

           Default is "http://www.ebi.ac.uk/soaplab/services" (a service running at European Bioinformatics
           Institute on top of most of the EMBOSS analyses, and on top of few others).

           For example, if you run your own Web Service using Java(TM) Apache Axis toolkit, the location might
           be something like "http://localhost:8080/axis/services".

       -httpproxy
           In addition to the location parameter, you may need to specify also a location/URL of an HTTP proxy
           server (if your site requires one). The expected format is "http://server:port".  There is no default
           value.

       -soap
           Defines your own SOAP::Lite object. Useful if you need finer-grained access to many features and
           attributes of the wonderful Paul Kulchenko's module.

   VERSION and Revision
        Usage   : print $Bio::Tools::Run::AnalysisFactory::soap::VERSION;
                  print $Bio::Tools::Run::AnalysisFactory::soap::Revision;