oracular (3) Bio::Tools::Run::BlastPlus.3pm.gz

NAME

       Bio::Tools::Run::BlastPlus - A wrapper for NCBI's blast+ suite

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Blast+ is NCBI's successor to the "blastall" family of programs.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
       http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Mark A. Jensen

       Email maj -at- fortinbras -dot- us

       Describe contact details here

CONTRIBUTORS

       Additional contributors names and emails here

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = new Bio::Tools::Run::BlastPlus();
        Function: Builds a new Bio::Tools::Run::BlastPlus object
        Returns : an instance of Bio::Tools::Run::BlastPlus
        Args    :

   program_version()
        Title   : program_version
        Usage   : $version = $bedtools_fac->program_version()
        Function: Returns the program version (if available)
        Returns : string representing location and version of the program
        Note    : this works around the WrapperBase::version() method conflicting with
                  the -version parameter for SABlast (good argument for not having
                  getter/setters for these)

   package_version()
        Title   : package_version
        Usage   : $version = $bedtools_fac->version()
        Function: Returns the BLAST+ package version (if available)
        Returns : string representing BLAST+ package version (may differ from version())