oracular (3) TFBS::Word.3pm.gz

Provided by: libtfbs-perl_0.7.1+ds-4_amd64 bug

NAME
       TFBS::Word - base class for word-based patterns


DESCRIPTION
       TFBS::Word is a base class consisting of universal constructor called by its subclasses
       (TFBS::Matrix::*), and word pattern manipulation methods that are independent of the word type. It is not
       meant to be instantiated itself.


FEEDBACK
       Please send bug reports and other comments to the author.


AUTHOR - Boris Lenhard
       Boris Lenhard <Boris.Lenhard@cgb.ki.se>


APPENDIX
       The rest of the documentation details each of the object methods. Internal methods are preceded with an
       underscore.

   new
   word
   validate_word
       Required in all subclasses

   length
   search_seq
   search_aln