Provided by: libgraph-perl_0.9733-1_all 
NAME
Graph - graph data structures and algorithms
SYNOPSIS
use Graph;
my $g0 = Graph->new; # A directed graph.
use Graph::Directed;
my $g1 = Graph::Directed->new; # A directed graph.
use Graph::Undirected;
my $g2 = Graph::Undirected->new; # An undirected graph.
$g->add_edge(...);
$g->has_edge(...)
$g->any_edge(...)
$g->delete_edge(...);
$g->add_vertex(...);
$g->has_vertex(...);
$g->delete_vertex(...);
$g->vertices(...)
$g->edges(...)
# And many, many more, see below.
DESCRIPTION
Non-Description
This module is not for drawing or rendering any sort of graphics or images, business, visualization, or
otherwise.
Description
Instead, this module is for creating abstract data structures called graphs, and for doing various
operations on those.
Perl 5.6.0 minimum
The implementation depends on a Perl feature called "weak references" and Perl 5.6.0 was the first to
have those.
Constructors
new Create an empty graph.
Graph->new(%options)
The options are a hash with option names as the hash keys and the option values as the hash values.
The following options are available:
directed
A boolean option telling that a directed graph should be created. Often somewhat redundant
because a directed graph is the default for the Graph class or one could simply use the new()
constructor of the Graph::Directed class.
You can test the directness of a graph with $g->is_directed() and $g->is_undirected().
undirected
A boolean option telling that an undirected graph should be created. One could also use the
new() constructor the Graph::Undirected class instead.
Note that while often it is possible to think of undirected graphs as bidirectional graphs,
or as directed graphs with edges going both ways, in this module directed graphs and
undirected graphs are two different things that often behave differently.
You can test the directness of a graph with $g->is_directed() and $g->is_undirected().
refvertexed
refvertexed_stringified
If you want to use references (including Perl objects) as vertices, use "refvertexed".
Note that using "refvertexed" means that internally the memory address of the reference (for
example, a Perl object) is used as the "identifier" of the vertex, not the stringified form
of the reference, even if you have defined your own stringification using "overload".
This avoids the problem of the stringified references potentially being identical (because
they are identical in value, for example) even if the references are different. If you
really want to use references and their stringified forms as the identities, use the
"refvertexed_stringified". But please do not stringify different objects to the same
stringified value.
unionfind
If the graph is undirected, you can specify the "unionfind" parameter to use the so-called
union-find scheme to speed up the computation of connected components of the graph (see
"is_connected", "connected_components", "connected_component_by_vertex",
"connected_component_by_index", and "same_connected_components"). If "unionfind" is used,
adding edges (and vertices) becomes slower, but connectedness queries become faster. You
must not delete edges or vertices of an unionfind graph, only add them. You can test a graph
for "union-findness" with
has_union_find
Returns true if the graph was created with a true "unionfind" parameter.
vertices
An array reference of vertices to add.
edges An array reference of array references of edge vertices to add.
copy
copy_graph
my $c = $g->copy_graph;
Create a shallow copy of the structure (vertices and edges) of the graph. If you want a deep copy
that includes attributes, see "deep_copy". The copy will have the same directedness as the original.
Also the following vertex/edge attributes are copied:
refvertexed/countvertexed/multivertexed
hyperedged/countedged/multiedged
NOTE: You can get an even shallower copy of a graph by
my $c = $g->new;
This will copy only the graph properties (directed, and so forth), but none of the vertices or edges.
As of 0.9712, you can also copy the graph properties of an existing object, but with overrides:
my $c = $g->new(multiedged => 0);
deep_copy
deep_copy_graph
my $c = $g->deep_copy_graph;
Create a deep copy of the graph (vertices, edges, and attributes) of the graph. If you want a
shallow copy that does not include attributes, see "copy".
Note that copying code references only works with Perls 5.8 or later, and even then only if
B::Deparse can reconstruct your code. This functionality uses either Storable or Data::Dumper behind
the scenes, depending on which is available (Storable is preferred).
If your vertices are references, the copied graph will have its connections fixed up. Support for
this is new as of 0.9723, so please report any problems.
undirected_copy
undirected_copy_graph
my $c = $g->undirected_copy_graph;
Create an undirected shallow copy (vertices and edges) of the directed graph so that for any directed
edge (u, v) there is an undirected edge (u, v). As of 0.9731 this preserves "multiedged" and
"multivertexed" IDs.
undirected_copy_clear_cache
$g->undirected_copy_clear_cache;
See "Clearing cached results".
weak_connectivity_undirected_graph_clear_cache
$g->weak_connectivity_undirected_graph_clear_cache;
See "Clearing cached results".
undirected_copy_attributes
Added in 0.9731. Like "undirected_copy" but also sets the copy's attributes to the same values as the
original's. This is not a deep copy, so use caution in handling the copy's attributes.
directed_copy
directed_copy_graph
my $c = $g->directed_copy_graph;
Create a directed shallow copy (vertices and edges) of the undirected graph so that for any
undirected edge (u, v) there are two directed edges (u, v) and (v, u). As of 0.9731 this preserves
"multiedged" and "multivertexed" IDs.
directed_copy_clear_cache
$g->directed_copy_clear_cache;
See "Clearing cached results".
directed_copy_attributes
Added in 0.9731. Like "directed_copy" but also sets the copy's attributes to the same values as the
original's. This is not a deep copy, so use caution in handling the copy's attributes.
transpose
transpose_graph
my $t = $g->transpose_graph;
Create a directed shallow transposed copy (vertices and edges) of the directed graph so that for any
directed edge (u, v) there is a directed edge (v, u).
You can also transpose a single edge with
transpose_edge
$g->transpose_edge($u, $v)
complete_graph
complete
my $c = $g->complete_graph;
Create a complete graph that has the same vertices as the original graph. A complete graph has an
edge between every pair of vertices.
max_cliques
my @cliques = $g->max_cliques;
Returns a list (or array reference in scalar context), each of its elements is an anonymous array of
vertices forming a maximal clique in the graph. The implementation uses the Bron-Kerbosch pivot
algorithm.
bron_kerbosch_pivot
$g->bron_kerbosch_pivot([], [$g->vertices], [], \ my @cliques);
Implements the Bron-Kerbosch pivot algorithm, mutating its fourth argument with the result.
complement_graph
complement
my $c = $g->complement_graph;
Create a complement graph that has the same vertices as the original graph. A complement graph has
an edge (u,v) if and only if the original graph does not have edge (u,v).
subgraph
my $c = $g->subgraph(\@src, \@dst);
my $c = $g->subgraph(\@src);
Creates a subgraph of a given graph. The created subgraph has the same graph properties
(directedness, and so forth) as the original graph, but none of the attributes (graph, vertex, or
edge).
A vertex is added to the subgraph if it is in the original graph.
An edge is added to the subgraph if there is an edge in the original graph that starts from the "src"
set of vertices and ends in the "dst" set of vertices.
You can leave out "dst" in which case "dst" is assumed to be the same: this is called a vertex-
induced subgraph.
See also "random_graph" for a random constructor.
Basics
add_vertex
$g->add_vertex($v)
Add the vertex to the graph. Returns the graph.
By default idempotent, but a graph can be created countvertexed.
A vertex is also known as a node.
Adding "undef" as vertex is not allowed.
Note that unless you have isolated vertices (or countvertexed vertices), you do not need to
explicitly use "add_vertex" since "add_edge" will implicitly add its vertices.
add_edge
$g->add_edge($u, $v)
Add the edge to the graph. Implicitly first adds the vertices if the graph does not have them.
Returns the graph.
By default idempotent, but a graph can be created countedged.
An edge is also known as an arc.
For a hypergraph, the interface is different: if undirected, give a list of one or more vertices. If
directed, give a list of two array-refs of vertices. As conceptually these are sets, the ordering of
the contents is not important.
has_vertex
$g->has_vertex($v)
Return true if the vertex exists in the graph, false otherwise.
has_edge
$g->has_edge($u, $v)
Return true if the edge exactly as specified exists in the graph, false otherwise.
Hyperedges which contain all the given vertices (in the right places if directed), but which also
have others will not match.
any_edge
$g->any_edge($u, $v)
Return true if any edge in the graph connects the first vertex to the second, false otherwise. Note
this is a different question from "has_edge". It will give the same result as checking the first
vertex's "successors" to see if any match the second one, but in a more efficient way.
delete_vertex
$g->delete_vertex($v)
Delete the vertex from the graph. Returns the graph, even if the vertex did not exist in the graph.
If the graph has been created multivertexed or countvertexed and a vertex has been added multiple
times, the vertex will require at least an equal number of deletions to become completely deleted.
delete_vertices
$g->delete_vertices($v1, $v2, ...)
Delete the vertices from the graph. Returns the graph, even if none of the vertices existed in the
graph.
If the graph has been created multivertexed or countvertexed and a vertex has been added multiple
times, the vertex will require at least an equal number of deletions to become completely deleted.
delete_edge
$g->delete_edge($u, $v)
Delete the edge from the graph. Returns the graph, even if the edge did not exist in the graph.
If the graph has been created multiedged or countedged and an edge has been added multiple times, the
edge will require at least an equal number of deletions to become completely deleted.
delete_edges
$g->delete_edges($u1, $v1, $u2, $v2, ...)
Delete the edges from the graph. Returns the graph, even if none of the edges existed in the graph.
If the graph has been created multiedged or countedged and an edge has been added multiple times, the
edge will require at least an equal number of deletions to become completely deleted.
Displaying
Graphs have stringification overload, so you can do things like
print "The graph is $g\n"
One-way (directed, unidirected) edges are shown as '-', two-way (undirected, bidirected) edges are shown
as '='. If you want to, you can call the stringification via the method
stringify
Boolean
Graphs have boolifying overload, so you can do things like
if ($g) { print "The graph is: $g\n" }
which works even if the graph is empty. In fact, the boolify always returns true. If you want to test
for example for vertices, test for vertices.
boolify
Comparing
Testing for equality can be done either by the overloaded "eq" operator
$g eq "a-b,a-c,d"
or by the method
eq
$g->eq("a-b,a-c,d")
The equality testing compares the stringified forms, and therefore it assumes total equality, not
isomorphism: all the vertices must be named the same, and they must have identical edges between them.
For unequality there are correspondingly the overloaded "ne" operator and the method
ne
$g->ne("a-b,a-c,d")
See also "Isomorphism".
Paths and Cycles
Paths and cycles are simple extensions of edges: paths are edges starting from where the previous edge
ended, and cycles are paths returning back to the start vertex of the first edge.
add_path
$g->add_path($a, $b, $c, ..., $x, $y, $z)
Add the edges $a-$b, $b-$c, ..., $x-$y, $y-$z to the graph. Returns the graph.
has_path
$g->has_path($a, $b, $c, ..., $x, $y, $z)
Return true if the graph has all the edges $a-$b, $b-$c, ..., $x-$y, $y-$z, false otherwise.
delete_path
$g->delete_path($a, $b, $c, ..., $x, $y, $z)
Delete all the edges $a-$b, $b-$c, ..., $x-$y, $y-$z (regardless of whether they exist or not).
Returns the graph.
add_cycle
$g->add_cycle($a, $b, $c, ..., $x, $y, $z)
Add the edges $a-$b, $b-$c, ..., $x-$y, $y-$z, and $z-$a to the graph. Returns the graph.
has_cycle
has_this_cycle
$g->has_cycle($a, $b, $c, ..., $x, $y, $z)
Return true if the graph has all the edges $a-$b, $b-$c, ..., $x-$y, $y-$z, and $z-$a, false
otherwise.
NOTE: This does not detect cycles, see "has_a_cycle" and "find_a_cycle".
delete_cycle
$g->delete_cycle($a, $b, $c, ..., $x, $y, $z)
Delete all the edges $a-$b, $b-$c, ..., $x-$y, $y-$z, and $z-$a (regardless of whether they exist or
not). Returns the graph.
has_a_cycle
$g->has_a_cycle
Returns true if the graph has a cycle, false if not.
find_a_cycle
$g->find_a_cycle
Returns a cycle if the graph has one (as a list of vertices), an empty list if no cycle can be found.
Note that this just returns the vertices of a cycle: not any particular cycle, just the first one it
finds. A repeated call might find the same cycle, or it might find a different one, and you cannot
call this repeatedly to find all the cycles.
Graph Types
is_simple_graph
$g->is_simple_graph
Return true if the graph has no multiedges, false otherwise.
is_pseudo_graph
$g->is_pseudo_graph
Return true if the graph has any multiedges or any self-loops, false otherwise.
is_multi_graph
$g->is_multi_graph
Return true if the graph has any multiedges but no self-loops, false otherwise.
is_directed_acyclic_graph
is_dag
$g->is_directed_acyclic_graph
$g->is_dag
Return true if the graph is directed and acyclic, false otherwise.
is_cyclic
$g->is_cyclic
Return true if the graph is cyclic (contains at least one cycle). (This is identical to
"has_a_cycle".)
To find at least one such cycle, see "find_a_cycle".
is_acyclic
Return true if the graph is acyclic (does not contain any cycles).
is_bipartite
Return true if the graph is bipartite (also known as 2-colourable, or not containing cycles of odd
length). Currently only works with undirected graphs.
is_planar
Return true if the graph is planar. The implementation is based on left-right planarity test as
described in A characterization of planar graphs by Trémaux orders, de Fraysseix and Rosenstiehl
<https://doi.org/10.1007/BF02579375>. Currently only works with undirected graphs.
To find a cycle, use "find_a_cycle".
Transitivity
is_transitive
$g->is_transitive
Return true if the graph is transitive, false otherwise.
TransitiveClosure_Floyd_Warshall
transitive_closure
$tcg = $g->TransitiveClosure_Floyd_Warshall
Return the transitive closure graph of the graph.
transitive_closure_matrix_clear_cache
$g->transitive_closure_matrix_clear_cache
See "Clearing cached results".
You can query the reachability from $u to $v with
is_reachable
$tcg->is_reachable($u, $v)
See Graph::TransitiveClosure for more information about creating and querying transitive closures.
With
transitive_closure_matrix
$tcm = $g->transitive_closure_matrix;
you can (create if not existing and) query the transitive closure matrix that underlies the transitive
closure graph. See Graph::TransitiveClosure::Matrix for more information.
Mutators
add_vertices
$g->add_vertices('d', 'e', 'f')
Add zero or more vertices to the graph. Returns the graph.
add_edges
$g->add_edges(['d', 'e'], ['f', 'g'])
$g->add_edges(qw(d e f g));
Add zero or more edges to the graph. The edges are specified as a list of array references, or as a
list of vertices where the even (0th, 2nd, 4th, ...) items are start vertices and the odd (1st, 3rd,
5th, ...) are the corresponding end vertices. Returns the graph.
For a hypergraph, each item in this list must be an array-ref of arguments suitable for "add_edge" -
so for undirected, of vertices; for directed, of two array-refs of vertices.
rename_vertex
$g->rename_vertex('d', 'e')
Renames a vertex. It retains all of its edges. Throws exception if doesn't exist.
Returns the graph.
rename_vertices
$g->rename_vertices(sub { uc $_[0] })
Calls a function for each vertex-name, renaming it to the return value.
Returns the graph.
filter_vertices
$g->filter_vertices(sub { my ($g, $v)=@_; $v =~ /^a/i })
Calls a function for each vertex; if it returns false, the vertex is deleted. Passed the graph, the
vertex, and if "multivertexed", the ID (called once per "incarnation", i.e. ID).
Returns the graph.
filter_edges
$g->filter_edges(sub { my ($g, $u, $v, $id)=@_; $id eq 'Bakerloo' })
Calls a function for each edge; if it returns false, the edge is deleted. Passed the graph, the
vertices, and if "multiedged", the ID (called once per "incarnation", i.e. ID).
Returns the graph.
ingest
$g->ingest($g2)
Ingests all the vertices and edges of the given graph, including attributes. Returns the ingesting
graph.
Accessors
is_directed
directed
$g->is_directed()
$g->directed()
Return true if the graph is directed, false otherwise.
is_undirected
undirected
$g->is_undirected()
$g->undirected()
Return true if the graph is undirected, false otherwise.
is_refvertexed
is_refvertexed_stringified
refvertexed
refvertexed_stringified
Return true if the graph can handle references (including Perl objects) as vertices.
vertices
my $V = $g->vertices
my @V = $g->vertices
In scalar context, return the number of vertices in the graph. In list context, return the vertices,
in no particular order.
has_vertices
$g->has_vertices()
Return true if the graph has any vertices, false otherwise.
edges
my $E = $g->edges
my @E = $g->edges
In scalar context, return the number of edges in the graph. In list context, return the edges, in no
particular order. The edges are returned as anonymous arrays listing the vertices.
has_edges
$g->has_edges()
Return true if the graph has any edges, false otherwise.
is_connected
$g->is_connected
For an undirected graph, return true if the graph is connected, false otherwise. Being connected
means that from every vertex it is possible to reach every other vertex.
If the graph has been created with a true "unionfind" parameter, the time complexity is (essentially)
O(V), otherwise O(V log V).
See also "connected_components", "connected_component_by_index", "connected_component_by_vertex", and
"same_connected_components", and "biconnectivity".
For directed graphs, see "is_strongly_connected" and "is_weakly_connected".
connected_components
@cc = $g->connected_components()
For an undirected graph, returns the vertices of the connected components of the graph as a list of
anonymous arrays. The ordering of the anonymous arrays or the ordering of the vertices inside the
anonymous arrays (the components) is undefined.
For directed graphs, see "strongly_connected_components" and "weakly_connected_components".
connected_component_by_vertex
$i = $g->connected_component_by_vertex($v)
For an undirected graph, return an index identifying the connected component the vertex belongs to,
the indexing starting from zero.
For the inverse, see "connected_component_by_index".
If the graph has been created with a true "unionfind" parameter, the time complexity is (essentially)
O(1), otherwise O(V log V).
See also "biconnectivity".
For directed graphs, see "strongly_connected_component_by_vertex" and
"weakly_connected_component_by_vertex".
connected_component_by_index
@v = $g->connected_component_by_index($i)
For an undirected graph, return the vertices of the ith connected component, the indexing starting
from zero. The order of vertices is undefined, while the order of the connected components is same
as from connected_components().
For the inverse, see "connected_component_by_vertex".
For directed graphs, see "strongly_connected_component_by_index" and
"weakly_connected_component_by_index".
same_connected_components
$g->same_connected_components($u, $v, ...)
For an undirected graph, return true if the vertices are in the same connected component.
If the graph has been created with a true "unionfind" parameter, the time complexity is (essentially)
O(1), otherwise O(V log V).
For directed graphs, see "same_strongly_connected_components" and "same_weakly_connected_components".
connected_graph
$cg = $g->connected_graph
For an undirected graph, return its connected graph.
connectivity_clear_cache
$g->connectivity_clear_cache
See "Clearing cached results".
See "Connected Graphs and Their Components" for further discussion.
biconnectivity
my ($ap, $bc, $br) = $g->biconnectivity
For an undirected graph, return the various biconnectivity components of the graph: the articulation
points (cut vertices), biconnected components, and bridges.
Note: currently only handles connected graphs.
is_biconnected
$g->is_biconnected
For an undirected graph, return true if the graph is biconnected (if it has no articulation points,
also known as cut vertices).
is_edge_connected
$g->is_edge_connected
For an undirected graph, return true if the graph is edge-connected (if it has no bridges).
Note: more precisely, this would be called is_edge_biconnected, since there is a more general concept
of being k-connected.
is_edge_separable
$g->is_edge_separable
For an undirected graph, return true if the graph is edge-separable (if it has bridges).
Note: more precisely, this would be called is_edge_biseparable, since there is a more general concept
of being k-connected.
articulation_points
cut_vertices
$g->articulation_points
For an undirected graph, return the articulation points (cut vertices) of the graph as a list of
vertices. The order is undefined.
biconnected_components
$g->biconnected_components
For an undirected graph, return the biconnected components of the graph as a list of anonymous arrays
of vertices in the components. The ordering of the anonymous arrays or the ordering of the vertices
inside the anonymous arrays (the components) is undefined. Also note that one vertex can belong to
more than one biconnected component.
biconnected_component_by_vertex
$i = $g->biconnected_component_by_index($v)
For an undirected graph, return the indices identifying the biconnected components the vertex belongs
to, the indexing starting from zero. The order of of the components is undefined.
For the inverse, see "connected_component_by_index".
For directed graphs, see "strongly_connected_component_by_index" and
"weakly_connected_component_by_index".
biconnected_component_by_index
@v = $g->biconnected_component_by_index($i)
For an undirected graph, return the vertices in the ith biconnected component of the graph as an
anonymous arrays of vertices in the component. The ordering of the vertices within a component is
undefined. Also note that one vertex can belong to more than one biconnected component.
same_biconnected_components
$g->same_biconnected_components($u, $v, ...)
For an undirected graph, return true if the vertices are in the same biconnected component.
biconnected_graph
$bcg = $g->biconnected_graph
For an undirected graph, return its biconnected graph.
See "Connected Graphs and Their Components" for further discussion.
bridges
$g->bridges
For an undirected graph, return the bridges of the graph as a list of anonymous arrays of vertices in
the bridges. The order of bridges and the order of vertices in them is undefined.
biconnectivity_clear_cache
$g->biconnectivity_clear_cache
See "Clearing cached results".
strongly_connected
is_strongly_connected
$g->is_strongly_connected
For a directed graph, return true if the directed graph is strongly connected, false if not.
See also "is_weakly_connected".
For undirected graphs, see "is_connected", or "is_biconnected".
strongly_connected_component_by_vertex
$i = $g->strongly_connected_component_by_vertex($v)
For a directed graph, return an index identifying the strongly connected component the vertex belongs
to, the indexing starting from zero.
For the inverse, see "strongly_connected_component_by_index".
See also "weakly_connected_component_by_vertex".
For undirected graphs, see "connected_components" or "biconnected_components".
strongly_connected_component_by_index
@v = $g->strongly_connected_component_by_index($i)
For a directed graph, return the vertices of the ith connected component, the indexing starting from
zero. The order of vertices within a component is undefined, while the order of the connected
components is as from strongly_connected_components().
For the inverse, see "strongly_connected_component_by_vertex".
For undirected graphs, see "weakly_connected_component_by_index".
same_strongly_connected_components
$g->same_strongly_connected_components($u, $v, ...)
For a directed graph, return true if the vertices are in the same strongly connected component.
See also "same_weakly_connected_components".
For undirected graphs, see "same_connected_components" or "same_biconnected_components".
strong_connectivity_clear_cache
$g->strong_connectivity_clear_cache
See "Clearing cached results".
weakly_connected
is_weakly_connected
$g->is_weakly_connected
For a directed graph, return true if the directed graph is weakly connected, false if not.
Weakly connected graph is also known as semiconnected graph.
See also "is_strongly_connected".
For undirected graphs, see "is_connected" or "is_biconnected".
weakly_connected_components
@wcc = $g->weakly_connected_components()
For a directed graph, returns the vertices of the weakly connected components of the graph as a list
of anonymous arrays. The ordering of the anonymous arrays or the ordering of the vertices inside the
anonymous arrays (the components) is undefined.
See also "strongly_connected_components".
For undirected graphs, see "connected_components" or "biconnected_components".
weakly_connected_component_by_vertex
$i = $g->weakly_connected_component_by_vertex($v)
For a directed graph, return an index identifying the weakly connected component the vertex belongs
to, the indexing starting from zero.
For the inverse, see "weakly_connected_component_by_index".
For undirected graphs, see "connected_component_by_vertex" and "biconnected_component_by_vertex".
weakly_connected_component_by_index
@v = $g->weakly_connected_component_by_index($i)
For a directed graph, return the vertices of the ith weakly connected component, the indexing
starting zero. The order of vertices within a component is undefined, while the order of the weakly
connected components is same as from weakly_connected_components().
For the inverse, see "weakly_connected_component_by_vertex".
For undirected graphs, see connected_component_by_index and biconnected_component_by_index.
same_weakly_connected_components
$g->same_weakly_connected_components($u, $v, ...)
Return true if the vertices are in the same weakly connected component.
weakly_connected_graph
$wcg = $g->weakly_connected_graph
For a directed graph, return its weakly connected graph.
For undirected graphs, see "connected_graph" and "biconnected_graph".
strongly_connected_components
my @scc = $g->strongly_connected_components;
For a directed graph, return the strongly connected components as a list of anonymous arrays. The
elements in the anonymous arrays are the vertices belonging to the strongly connected component; both
the elements and the components are in no particular order.
Note that strongly connected components can have single-element components even without self-loops:
if a vertex is any of isolated, sink, or a source, the vertex is alone in its own strong component.
See also "weakly_connected_components".
For undirected graphs, see "connected_components", or see "biconnected_components".
strongly_connected_graph
my $scg = $g->strongly_connected_graph;
See "Connected Graphs and Their Components" for further discussion.
Strongly connected graphs are also known as kernel graphs.
See also "weakly_connected_graph".
For undirected graphs, see "connected_graph", or "biconnected_graph".
is_sink_vertex
$g->is_sink_vertex($v)
Return true if the vertex $v is a sink vertex, false if not. A sink vertex is defined as a vertex
with predecessors but no successors: this definition means that isolated vertices are not sink
vertices. If you want also isolated vertices, use is_successorless_vertex().
is_source_vertex
$g->is_source_vertex($v)
Return true if the vertex $v is a source vertex, false if not. A source vertex is defined as a
vertex with successors but no predecessors: the definition means that isolated vertices are not
source vertices. If you want also isolated vertices, use is_predecessorless_vertex().
is_successorless_vertex
$g->is_successorless_vertex($v)
Return true if the vertex $v has no successors (no edges leaving the vertex), false if it has.
Isolated vertices will return true: if you do not want this, use is_sink_vertex().
is_successorful_vertex
$g->is_successorful_vertex($v)
Return true if the vertex $v has successors, false if not.
is_predecessorless_vertex
$g->is_predecessorless_vertex($v)
Return true if the vertex $v has no predecessors (no edges entering the vertex), false if it has.
Isolated vertices will return true: if you do not want this, use is_source_vertex().
is_predecessorful_vertex
$g->is_predecessorful_vertex($v)
Return true if the vertex $v has predecessors, false if not.
is_isolated_vertex
$g->is_isolated_vertex($v)
Return true if the vertex $v is an isolated vertex: no successors and no predecessors.
is_interior_vertex
$g->is_interior_vertex($v)
Return true if the vertex $v is an interior vertex: both successors and predecessors.
is_exterior_vertex
$g->is_exterior_vertex($v)
Return true if the vertex $v is an exterior vertex: has either no successors or no predecessors, or
neither.
is_self_loop_vertex
$g->is_self_loop_vertex($v)
Return true if the vertex $v is a self loop vertex: has an edge from itself to itself.
For an undirected hypergraph, only true if an edge has the vertex as its sole participant.
sink_vertices
@v = $g->sink_vertices()
Return the sink vertices of the graph. In scalar context return the number of sink vertices. See
"is_sink_vertex" for the definition of a sink vertex.
source_vertices
@v = $g->source_vertices()
Return the source vertices of the graph. In scalar context return the number of source vertices.
See "is_source_vertex" for the definition of a source vertex.
successorful_vertices
@v = $g->successorful_vertices()
Return the successorful vertices of the graph. In scalar context return the number of successorful
vertices.
successorless_vertices
@v = $g->successorless_vertices()
Return the successorless vertices of the graph. In scalar context return the number of successorless
vertices.
successors
@s = $g->successors($v)
Return the immediate successor vertices of the vertex.
See also "all_successors", "all_neighbours", and "all_reachable".
all_successors
@s = $g->all_successors(@v)
For a directed graph, returns all successor vertices of the argument vertices, recursively.
For undirected graphs, see "all_neighbours" and "all_reachable".
See also "successors", "successors_by_radius".
successors_by_radius
@s = $g->successors_by_radius(@v, $radius)
For a directed graph, returns all successor vertices of the argument vertices, recursively.
For undirected graphs, see "all_neighbours" and "all_reachable".
See also "successors", "successors_by_radius".
neighbors
neighbours
@n = $g->neighbours($v)
Return the neighboring/neighbouring vertices. Also known as the adjacent vertices.
See also "all_neighbours" "all_reachable", and "neighbours_by_radius".
all_neighbors
all_neighbours
@n = $g->all_neighbours(@v)
Return the neighboring/neighbouring vertices of the argument vertices, recursively. For a directed
graph, recurses up predecessors and down successors. For an undirected graph, returns all the
vertices reachable from the argument vertices: equivalent to "all_reachable".
See also "neighbours", "all_reachable", and "neighbours_by_radius".
neighbors_by_radius
neighbours_by_radius
@n = $g->neighbours_by_radius(@v, $radius)
Return the neighboring/neighbouring vertices of the argument vertices, recursively, out to the given
radius.
all_reachable
@r = $g->all_reachable(@v)
Return all the vertices reachable from the argument vertices, recursively. For a directed graph,
equivalent to "all_successors". For an undirected graph, equivalent to "all_neighbours". The
argument vertices are not included in the results unless there are explicit self-loops.
See also "neighbours", "all_neighbours", "all_successors", and "reachable_by_radius".
reachable_by_radius
@r = $g->reachable_by_radius(@v, $radius)
Return all the vertices reachable from the argument vertices, recursively, out to the given radius.
predecessorful_vertices
@v = $g->predecessorful_vertices()
Return the predecessorful vertices of the graph. In scalar context return the number of
predecessorful vertices.
predecessorless_vertices
@v = $g->predecessorless_vertices()
Return the predecessorless vertices of the graph. In scalar context return the number of
predecessorless vertices.
predecessors
@p = $g->predecessors($v)
Return the immediate predecessor vertices of the vertex.
See also "all_predecessors", "all_neighbours", and "all_reachable".
all_predecessors
@p = $g->all_predecessors(@v)
For a directed graph, returns all predecessor vertices of the argument vertices, recursively.
For undirected graphs, see "all_neighbours" and "all_reachable".
See also "predecessors", "predecessors_by_radius".
predecessors_by_radius
@p = $g->predecessors_by_radius(@v, $radius)
For a directed graph, returns all predecessor vertices of the argument vertices, recursively, out to
the given radius.
isolated_vertices
@v = $g->isolated_vertices()
Return the isolated vertices of the graph. In scalar context return the number of isolated vertices.
See "is_isolated_vertex" for the definition of an isolated vertex.
interior_vertices
@v = $g->interior_vertices()
Return the interior vertices of the graph. In scalar context return the number of interior vertices.
See "is_interior_vertex" for the definition of an interior vertex.
exterior_vertices
@v = $g->exterior_vertices()
Return the exterior vertices of the graph. In scalar context return the number of exterior vertices.
See "is_exterior_vertex" for the definition of an exterior vertex.
self_loop_vertices
@v = $g->self_loop_vertices()
Return the self-loop vertices of the graph. In scalar context return the number of self-loop
vertices. See "is_self_loop_vertex" for the definition of a self-loop vertex.
as_hashes
($nodes, $edges) = $g->as_hashes
Return hash-refs which map vertices to their attributes, and for edges, a two-level hash mapping the
predecessor to its successors, mapped to the attributes.
If "multivertexed" is true, the vertices hash will have the second-level values be the multivertex's
ID, and the third level will be attributes as above.
If "multiedged" is true, similar will be true for the edges hash.
For a hypergraph, the edges will instead be an array-ref of hashes with a key of "attributes", value
a hash-ref (if "multiedged", two-level as above). Then with values of array-refs of vertex-names, for
undirected:
vertices
And directed:
predecessors
successors
Connected Graphs and Their Components
In this discussion connected graph refers to any of connected graphs, biconnected graphs, and strongly
connected graphs.
NOTE: if the vertices of the original graph are Perl objects, (in other words, references, so you must be
using "refvertexed") the vertices of the connected graph are NOT by default usable as Perl objects
because they are blessed into a package with a rather unusable name.
By default, the vertex names of the connected graph are formed from the names of the vertices of the
original graph by (alphabetically sorting them and) concatenating their names with "+". The vertex
attribute "subvertices" is also used to store the list (as an array reference) of the original vertices.
To change the 'supercomponent' vertex names and the whole logic of forming these supercomponents use the
"super_component") option to the method calls:
$g->connected_graph(super_component => sub { ... })
$g->biconnected_graph(super_component => sub { ... })
$g->strongly_connected_graph(super_component => sub { ... })
The subroutine reference gets the 'subcomponents' (the vertices of the original graph) as arguments, and
it is supposed to return the new supercomponent vertex, the "stringified" form of which is used as the
vertex name.
Degree
A vertex has a degree based on the number of incoming and outgoing edges. This really makes sense only
for directed graphs.
degree
vertex_degree
$d = $g->degree($v)
$d = $g->vertex_degree($v)
For directed graphs: the in-degree minus the out-degree at the vertex.
For undirected graphs: the number of edges at the vertex (identical to in_degree(), out_degree()).
in_degree
$d = $g->in_degree($v)
For directed graphs: the number of incoming edges at the vertex.
For undirected graphs: the number of edges at the vertex (identical to out_degree(), degree(),
vertex_degree()).
out_degree
$o = $g->out_degree($v)
For directed graphs: The number of outgoing edges at the vertex.
For undirected graphs: the number of edges at the vertex (identical to in_degree(), degree(),
vertex_degree()).
Related methods are
edges_at
@e = $g->edges_at($v)
The union of edges from, and edges to, the vertex.
edges_from
@e = $g->edges_from($v)
The edges leaving the vertex.
edges_to
@e = $g->edges_to($v)
The edges entering the vertex.
Counted Vertices
Counted vertices are vertices with more than one instance, normally adding vertices is idempotent. To
enable counted vertices on a graph, give the "countvertexed" parameter a true value
use Graph;
my $g = Graph->new(countvertexed => 1);
To find out how many times the vertex has been added:
get_vertex_count
my $c = $g->get_vertex_count($v);
Return the count of the vertex, or undef if the vertex does not exist.
Multiedges, Multivertices, Multigraphs
Multiedges are edges with more than one "life", meaning that one has to delete them as many times as they
have been added. Normally adding edges is idempotent (in other words, adding edges more than once makes
no difference).
There are two kinds or degrees of creating multiedges and multivertices. The two kinds are mutually
exclusive.
The weaker kind is called counted, in which the edge or vertex has a count on it: add operations increase
the count, and delete operations decrease the count, and once the count goes to zero, the edge or vertex
is deleted. If there are attributes, they all are attached to the same vertex. You can think of this as
the graph elements being refcounted, or reference counted, if that sounds more familiar.
The stronger kind is called (true) multi, in which the edge or vertex really has multiple separate
identities, so that you can for example attach different attributes to different instances.
To enable multiedges on a graph:
use Graph;
my $g0 = Graph->new(countedged => 1); # "weaker" kind
my $g0 = Graph->new(multiedged => 1); # "stronger" kind
Similarly for vertices
use Graph;
my $g1 = Graph->new(countvertexed => 1); # "weaker" kind
my $g1 = Graph->new(multivertexed => 1); # "stronger" kind
You can test for these by
is_countedged
countedged
$g->is_countedged
$g->countedged
Return true if the graph is countedged.
is_countvertexed
countvertexed
$g->is_countvertexed
$g->countvertexed
Return true if the graph is countvertexed.
is_multiedged
multiedged
$g->is_multiedged
$g->multiedged
Return true if the graph is multiedged.
is_multivertexed
multivertexed
$g->is_multivertexed
$g->multivertexed
Return true if the graph is multivertexed.
A multiedged (either the weak kind or the strong kind) graph is a multigraph, for which you can test with
is_multi_graph().
NOTE: The various graph algorithms do not in general work well with multigraphs (they often assume simple
graphs, that is, no multiedges or loops), and no effort has been made to test all algorithms with
multigraphs. However, "SP_Dijkstra" and "SP_Bellman_Ford" have been tested with multiedges and do work
(they choose the lowest weight of a given edge's incarnations).
vertices() and edges() will return the multiple elements: if you want just the unique elements, use
unique_vertices
unique_edges
@uv = $g->unique_vertices; # unique
@mv = $g->vertices; # possible multiples
@ue = $g->unique_edges;
@me = $g->edges;
If you are using (the stronger kind of) multielements, you should use the by_id variants:
add_vertex_by_id
has_vertex_by_id
delete_vertex_by_id
add_edge_by_id
has_edge_by_id
delete_edge_by_id
$g->add_vertex_by_id($v, $id)
$g->has_vertex_by_id($v, $id)
$g->delete_vertex_by_id($v, $id)
$g->add_edge_by_id($u, $v, $id)
$g->has_edge_by_id($u, $v, $id)
$g->delete_edge_by_id($u, $v, $id)
These interfaces only apply to multivertices and multiedges. When you delete the last vertex/edge in a
multivertex/edge, the whole vertex/edge is deleted. You can use add_vertex()/add_edge() on a
multivertex/multiedge graph, in which case an id is generated automatically. To find out which the
generated id was, you need to use
add_vertex_get_id
add_edge_get_id
$idv = $g->add_vertex_get_id($v)
$ide = $g->add_edge_get_id($u, $v)
To return all the ids of vertices/edges in a multivertex/multiedge, use
get_multivertex_ids
get_multiedge_ids
$g->get_multivertex_ids($v)
$g->get_multiedge_ids($u, $v)
The ids are returned in random order.
To find out how many times the edge has been added (this works for either kind of multiedges):
get_edge_count
my $c = $g->get_edge_count($u, $v);
Return the count (the "countedness") of the edge, or undef if the edge does not exist.
The following multi-entity utility functions exist, mirroring the non-multi vertices and edges:
add_path_by_id
add_edges_by_id
add_weighted_edge_by_id
add_weighted_edges_by_id
add_weighted_path_by_id
add_weighted_vertex_by_id
add_weighted_vertices_by_id
delete_edge_weight_by_id
delete_vertex_weight_by_id
get_edge_weight_by_id
get_vertex_weight_by_id
has_edge_weight_by_id
has_vertex_weight_by_id
set_edge_weight_by_id
set_vertex_weight_by_id
Topological Sort
topological_sort
toposort
my @ts = $g->topological_sort;
Return the vertices of the graph sorted topologically. Note that there may be several possible
topological orderings; one of them is returned.
If the graph contains a cycle, a fatal error is thrown, you can either use "eval" to trap that, or
supply the "empty_if_cyclic" argument with a true value
my @ts = $g->topological_sort(empty_if_cyclic => 1);
in which case an empty array is returned if the graph is cyclic.
Minimum Spanning Trees (MST)
Minimum Spanning Trees or MSTs are tree subgraphs derived from an undirected graph. MSTs "span the
graph" (covering all the vertices) using as lightly weighted (hence the "minimum") edges as possible.
MST_Kruskal
$mstg = $g->MST_Kruskal;
Returns the Kruskal MST of the graph.
MST_Prim
$mstg = $g->MST_Prim(%opt);
Returns the Prim MST of the graph.
You can choose the first vertex with $opt{ first_root }.
MST_Dijkstra
minimum_spanning_tree
$mstg = $g->MST_Dijkstra;
$mstg = $g->minimum_spanning_tree;
Aliases for MST_Prim.
Single-Source Shortest Paths (SSSP)
Single-source shortest paths, also known as Shortest Path Trees (SPTs). For either a directed or an
undirected graph, return a (tree) subgraph that from a single start vertex (the "single source") travels
the shortest possible paths (the paths with the lightest weights) to all the other vertices. Note that
the SSSP is neither reflexive (the shortest paths do not include the zero-length path from the source
vertex to the source vertex) nor transitive (the shortest paths do not include transitive closure paths).
If no weight is defined for an edge, 1 (one) is assumed.
SPT_Dijkstra
$sptg = $g->SPT_Dijkstra($root)
$sptg = $g->SPT_Dijkstra(%opt)
Return as a graph the the single-source shortest paths of the graph using Dijkstra's algorithm. The
graph cannot contain negative edges (negative edges cause the algorithm to abort with an error
message "Graph::SPT_Dijkstra: edge ... is negative").
You can choose the first vertex of the result with either a single vertex argument or with $opt{
first_root }, otherwise a random vertex is chosen.
NOTE: note that all the vertices might not be reachable from the selected (explicit or random) start
vertex.
NOTE: after the first reachable tree from the first start vertex has been finished, and if there
still are unvisited vertices, SPT_Dijkstra will keep on selecting unvisited vertices.
The next roots (in case the first tree doesn't visit all the vertices) can be chosen by setting one
of the following options to true: "next_root", "next_alphabetic", "next_numeric", "next_random".
The "next_root" is the most customizable: the value needs to be a subroutine reference which will
receive the graph and the unvisited vertices as hash reference. If you want to only visit the first
tree, use "next_root =" sub { undef }>. The rest of these options are booleans. If none of them are
true, a random unvisited vertex will be selected.
The first start vertex is available as the graph attribute "SPT_Dijkstra_root").
The result weights of vertices can be retrieved from the result graph by
my $w = $sptg->get_vertex_attribute($v, 'weight');
The predecessor vertex of a vertex in the result graph can be retrieved by
my $u = $sptg->get_vertex_attribute($v, 'p');
("A successor vertex" cannot be retrieved as simply because a single vertex can have several
successors. You can first find the neighbors() vertices and then remove the predecessor vertex.)
If you want to find the shortest path between two vertices, see "SP_Dijkstra".
SSSP_Dijkstra
single_source_shortest_paths
Aliases for SPT_Dijkstra.
SP_Dijkstra
@path = $g->SP_Dijkstra($u, $v)
Return the vertices in the shortest path in the graph $g between the two vertices $u, $v. If no path
can be found, an empty list is returned.
Uses SPT_Dijkstra().
SPT_Dijkstra_clear_cache
$g->SPT_Dijkstra_clear_cache
See "Clearing cached results".
SPT_Bellman_Ford
$sptg = $g->SPT_Bellman_Ford(%opt)
Return as a graph the single-source shortest paths of the graph using Bellman-Ford's algorithm. The
graph can contain negative edges but not negative cycles (negative cycles cause the algorithm to
abort with an error message "Graph::SPT_Bellman_Ford: negative cycle exists").
You can choose the start vertex of the result with either a single vertex argument or with $opt{
first_root }, otherwise a random vertex is chosen.
NOTE: note that all the vertices might not be reachable from the selected (explicit or random) start
vertex.
The start vertex is available as the graph attribute "SPT_Bellman_Ford_root").
The result weights of vertices can be retrieved from the result graph by
my $w = $sptg->get_vertex_attribute($v, 'weight');
The predecessor vertex of a vertex in the result graph can be retrieved by
my $u = $sptg->get_vertex_attribute($v, 'p');
("A successor vertex" cannot be retrieved as simply because a single vertex can have several
successors. You can first find the neighbors() vertices and then remove the predecessor vertex.)
If you want to find the shortest path between two vertices, see "SP_Bellman_Ford".
SSSP_Bellman_Ford
Alias for SPT_Bellman_Ford.
SP_Bellman_Ford
@path = $g->SP_Bellman_Ford($u, $v)
Return the vertices in the shortest path in the graph $g between the two vertices $u, $v. If no path
can be found, an empty list is returned.
Uses SPT_Bellman_Ford().
SPT_Bellman_Ford_clear_cache
$g->SPT_Bellman_Ford_clear_cache
See "Clearing cached results".
All-Pairs Shortest Paths (APSP)
For either a directed or an undirected graph, return the APSP object describing all the possible paths
between any two vertices of the graph. If no weight is defined for an edge, 1 (one) is assumed.
Note that weight of 0 (zero) does not mean do not use this edge, it means essentially the opposite: an
edge that has zero cost, an edge that makes the vertices the same.
APSP_Floyd_Warshall
all_pairs_shortest_paths
my $apsp = $g->APSP_Floyd_Warshall(...);
Return the all-pairs shortest path object computed from the graph using the Floyd-Warshall algorithm,
of class Graph::TransitiveClosure.
The length of a path between two vertices is the sum of weight attribute of the edges along the
shortest path between the two vertices. If no weight attribute name is specified explicitly
$g->APSP_Floyd_Warshall(attribute_name => 'height');
the attribute "weight" is assumed.
If an edge has no defined weight attribute, the value of one is assumed when getting the attribute.
Once computed, you can query the APSP object with
path_length
my $l = $apsp->path_length($u, $v);
Return the length of the shortest path between the two vertices.
path_vertices
my @v = $apsp->path_vertices($u, $v);
Return the list of vertices along the shortest path.
path_successor
my $u = $apsp->path_successor($u, $v);
Returns the successor of vertex $u in the all-pairs shortest path to $v.
all_paths
my @paths = $apsp->all_paths($u, $v);
Return list of array-refs with all the paths from $u to $v.
average_path_length
my $apl = $g->average_path_length; # All vertex pairs.
my $apl = $g->average_path_length($u); # From $u.
my $apl = $g->average_path_length($u, undef); # From $u.
my $apl = $g->average_path_length($u, $v); # From $u to $v.
my $apl = $g->average_path_length(undef, $v); # To $v.
Return the average (shortest) path length over all the non-zero paths between vertex pairs of
the graph's transitive closure. Depending on the arguments, this can be from a vertex,
between two vertices, or to a vertex. An undefined (or not-given) vertex will match all.
longest_path
my @lp = $g->longest_path;
my $lp = $g->longest_path;
In scalar context return the longest shortest path length over all the vertex pairs of the
graph. In list context return the vertices along a longest shortest path. Note that there
might be more than one such path; this interface returns a random one of them.
NOTE: this returns the longest shortest path, not the longest path.
diameter
graph_diameter
my $gd = $g->diameter;
The longest path over all the vertex pairs is known as the graph diameter.
For an unconnected graph, single-vertex, or empty graph, returns "undef".
shortest_path
my @sp = $g->shortest_path;
my $sp = $g->shortest_path;
In scalar context return the shortest length over all the vertex pairs of the graph. In list
context return the vertices along a shortest path. Note that there might be more than one
such path; this interface returns a random one of them.
For an unconnected, single-vertex, or empty graph, returns "undef" or an empty list.
radius
my $gr = $g->radius;
The shortest longest path over all the vertex pairs is known as the graph radius. See also
"diameter".
For an unconnected, single-vertex, or empty graph, returns Infinity.
center_vertices
centre_vertices
my @c = $g->center_vertices;
my @c = $g->center_vertices($delta);
The graph center is the set of vertices for which the vertex eccentricity is equal to the
graph radius. The vertices are returned in random order. By specifying a delta value you
can widen the criterion from strict equality (handy for non-integer edge weights).
For an unconnected, single-vertex, or empty graph, returns an empty list.
vertex_eccentricity
my $ve = $g->vertex_eccentricity($v);
The longest path to a vertex is known as the vertex eccentricity.
If the graph is unconnected, single-vertex, or empty graph, returns Inf.
You can walk through the matrix of the shortest paths by using
for_shortest_paths
$n = $g->for_shortest_paths($callback)
The number of shortest paths is returned (this should be equal to V*V). The $callback is a sub
reference that receives four arguments: the transitive closure object from
Graph::TransitiveClosure, the two vertices, and the index to the current shortest paths
(0..V*V-1).
Clearing cached results
For many graph algorithms there are several different but equally valid results. (Pseudo)Randomness is
used internally by the Graph module to for example pick a random starting vertex, and to select random
edges from a vertex.
For efficiency the computed result is often cached to avoid recomputing the potentially expensive
operation, and this also gives additional determinism (once a correct result has been computed, the same
result will always be given).
However, sometimes the exact opposite is desirable, and the possible alternative results are wanted
(within the limits of the pseudorandomness: not all the possible solutions are guaranteed to be returned,
usually only a subset is returned). To undo the caching, the following methods are available:
• connectivity_clear_cache
Affects "connected_components", "connected_component_by_vertex", "connected_component_by_index",
"same_connected_components", "connected_graph", "is_connected", "is_weakly_connected",
"weakly_connected_components", "weakly_connected_component_by_vertex",
"weakly_connected_component_by_index", "same_weakly_connected_components", "weakly_connected_graph".
• biconnectivity_clear_cache
Affects "biconnected_components", "biconnected_component_by_vertex",
"biconnected_component_by_index", "is_edge_connected", "is_edge_separable", "articulation_points",
"cut_vertices", "is_biconnected", "biconnected_graph", "same_biconnected_components", "bridges".
• strong_connectivity_clear_cache
Affects "strongly_connected_components", "strongly_connected_component_by_vertex",
"strongly_connected_component_by_index", "same_strongly_connected_components",
"is_strongly_connected", "strongly_connected", "strongly_connected_graph".
• SPT_Dijkstra_clear_cache
Affects "SPT_Dijkstra", "SSSP_Dijkstra", "single_source_shortest_paths", "SP_Dijkstra".
• SPT_Bellman_Ford_clear_cache
Affects "SPT_Bellman_Ford", "SSSP_Bellman_Ford", "SP_Bellman_Ford".
Note that any such computed and cached results are of course always automatically discarded whenever the
graph is modified.
Random
You can either ask for random elements of existing graphs or create random graphs.
random_vertex
my $v = $g->random_vertex;
Return a random vertex of the graph, or undef if there are no vertices.
random_edge
my $e = $g->random_edge;
Return a random edge of the graph as an array reference having the vertices as elements, or undef if
there are no edges.
random_successor
my $v = $g->random_successor($v);
Return a random successor of the vertex in the graph, or undef if there are no successors.
random_predecessor
my $u = $g->random_predecessor($v);
Return a random predecessor of the vertex in the graph, or undef if there are no predecessors.
random_graph
my $g = Graph->random_graph(%opt);
Construct a random graph. The %opt must contain the "vertices" argument
vertices => vertices_def
where the vertices_def is one of
• an array reference where the elements of the array reference are the vertices
• a number N in which case the vertices will be integers 0..N-1
The %opt may have either of the argument "edges" or the argument "edges_fill". Both are used to define
how many random edges to add to the graph; "edges" is an absolute number, while "edges_fill" is a
relative number (relative to the number of edges in a complete graph, C). The number of edges can be
larger than C, but only if the graph is countedged. The random edges will not include self-loops. If
neither "edges" nor "edges_fill" is specified, an "edges_fill" of 0.5 is assumed.
If you want repeatable randomness (what is an oxymoron?) you can use the "random_seed" option:
$g = Graph->random_graph(vertices => 10, random_seed => 1234);
As this uses the standard Perl srand(), the usual caveat applies: use it sparingly, and consider instead
using a single srand() call at the top level of your application.
The default random distribution of edges is flat, that is, any pair of vertices is equally likely to
appear. To define your own distribution, use the "random_edge" option:
$g = Graph->random_graph(vertices => 10, random_edge => \&d);
where "d" is a code reference receiving ($g, $u, $v, $p) as parameters, where the $g is the random graph,
$u and $v are the vertices, and the $p is the probability ([0,1]) for a flat distribution. It must
return a probability ([0,1]) that the vertices $u and $v have an edge between them. Note that returning
one for a particular pair of vertices doesn't guarantee that the edge will be present in the resulting
graph because the required number of edges might be reached before that particular pair is tested for the
possibility of an edge. Be very careful to adjust also "edges" or "edges_fill" so that there is a
possibility of the filling process terminating.
NOTE: a known problem with randomness in openbsd pre-perl-5.20 is that using a seed does not give you
deterministic randomness. This affects any Perl code, not just Graph.
Attributes
You can attach free-form attributes (key-value pairs, in effect a full Perl hash) to each vertex, edge,
and the graph itself.
Note that attaching attributes does slow down some other operations on the graph by a factor of three to
ten. For example adding edge attributes does slow down anything that walks through all the edges.
For vertex attributes:
set_vertex_attribute
$g->set_vertex_attribute($v, $name, $value)
Set the named vertex attribute.
If the vertex does not exist, the set_...() will create it, and the other vertex attribute methods
will return false or empty.
NOTE: any attributes beginning with an underscore/underline (_) are reserved for the internal use of
the Graph module.
get_vertex_attribute
$value = $g->get_vertex_attribute($v, $name)
Return the named vertex attribute.
has_vertex_attribute
$g->has_vertex_attribute($v, $name)
Return true if the vertex has an attribute, false if not.
delete_vertex_attribute
$g->delete_vertex_attribute($v, $name)
Delete the named vertex attribute.
set_vertex_attributes
$g->set_vertex_attributes($v, $attr)
Set all the attributes of the vertex from the anonymous hash $attr.
NOTE: any attributes beginning with an underscore ("_") are reserved for the internal use of the
Graph module.
get_vertex_attributes
$attr = $g->get_vertex_attributes($v)
Return all the attributes of the vertex as an anonymous hash, or "undef" if no such vertex.
get_vertex_attribute_names
@name = $g->get_vertex_attribute_names($v)
Return the names of vertex attributes.
get_vertex_attribute_values
@value = $g->get_vertex_attribute_values($v)
Return the values of vertex attributes.
has_vertex_attributes
$g->has_vertex_attributes($v)
Return true if the vertex has any attributes, false if not.
delete_vertex_attributes
$g->delete_vertex_attributes($v)
Delete all the attributes of the named vertex.
If you are using multivertices, use the by_id variants:
set_vertex_attribute_by_id
get_vertex_attribute_by_id
has_vertex_attribute_by_id
delete_vertex_attribute_by_id
set_vertex_attributes_by_id
get_vertex_attributes_by_id
get_vertex_attribute_names_by_id
get_vertex_attribute_values_by_id
has_vertex_attributes_by_id
delete_vertex_attributes_by_id
$g->set_vertex_attribute_by_id($v, $id, $name, $value)
$g->get_vertex_attribute_by_id($v, $id, $name)
$g->has_vertex_attribute_by_id($v, $id, $name)
$g->delete_vertex_attribute_by_id($v, $id, $name)
$g->set_vertex_attributes_by_id($v, $id, $attr)
$g->get_vertex_attributes_by_id($v, $id)
$g->get_vertex_attribute_values_by_id($v, $id)
$g->get_vertex_attribute_names_by_id($v, $id)
$g->has_vertex_attributes_by_id($v, $id)
$g->delete_vertex_attributes_by_id($v, $id)
For edge attributes:
set_edge_attribute
$g->set_edge_attribute($u, $v, $name, $value)
Set the named edge attribute.
If the edge does not exist, the set_...() will create it, and the other edge attribute methods will
return false or empty.
NOTE: any attributes beginning with an underscore ("_") are reserved for the internal use of the
Graph module.
get_edge_attribute
$value = $g->get_edge_attribute($u, $v, $name)
Return the named edge attribute.
has_edge_attribute
$g->has_edge_attribute($u, $v, $name)
Return true if the edge has an attribute, false if not.
delete_edge_attribute
$g->delete_edge_attribute($u, $v, $name)
Delete the named edge attribute.
set_edge_attributes
$g->set_edge_attributes($u, $v, $attr)
Set all the attributes of the edge from the anonymous hash $attr.
NOTE: any attributes beginning with an underscore ("_") are reserved for the internal use of the
Graph module.
get_edge_attributes
$attr = $g->get_edge_attributes($u, $v)
Return all the attributes of the edge as an anonymous hash, or "undef" if no such edge.
get_edge_attribute_names
@name = $g->get_edge_attribute_names($u, $v)
Return the names of edge attributes.
get_edge_attribute_values
@value = $g->get_edge_attribute_values($u, $v)
Return the values of edge attributes.
has_edge_attributes
$g->has_edge_attributes($u, $v)
Return true if the edge has any attributes, false if not.
delete_edge_attributes
$g->delete_edge_attributes($u, $v)
Delete all the attributes of the named edge.
If you are using multiedges, use the by_id variants:
set_edge_attribute_by_id
get_edge_attribute_by_id
has_edge_attribute_by_id
delete_edge_attribute_by_id
set_edge_attributes_by_id
get_edge_attributes_by_id
get_edge_attribute_names_by_id
get_edge_attribute_values_by_id
has_edge_attributes_by_id
delete_edge_attributes_by_id
$g->set_edge_attribute_by_id($u, $v, $id, $name, $value)
$g->get_edge_attribute_by_id($u, $v, $id, $name)
$g->has_edge_attribute_by_id($u, $v, $id, $name)
$g->delete_edge_attribute_by_id($u, $v, $id, $name)
$g->set_edge_attributes_by_id($u, $v, $id, $attr)
$g->get_edge_attributes_by_id($u, $v, $id)
$g->get_edge_attribute_values_by_id($u, $v, $id)
$g->get_edge_attribute_names_by_id($u, $v, $id)
$g->has_edge_attributes_by_id($u, $v, $id)
$g->delete_edge_attributes_by_id($u, $v, $id)
For handling transparently graphs that are either "multiedged" or not:
get_edge_attribute_all
To get all values of a given attribute for a given edge, use "get_edge_attribute_all":
@values = $g->get_edge_attribute_all($u, $v, $name)
This will return all defined values for that edge and attribute, whether the graph is "multiedged" or
not. This will be in no particular order. This is useful for path-weight calculation.
For graph attributes:
set_graph_attribute
$g->set_graph_attribute($name, $value)
Set the named graph attribute.
NOTE: any attributes beginning with an underscore ("_") are reserved for the internal use of the
Graph module.
get_graph_attribute
$value = $g->get_graph_attribute($name)
Return the named graph attribute.
has_graph_attribute
$g->has_graph_attribute($name)
Return true if the graph has an attribute, false if not.
delete_graph_attribute
$g->delete_graph_attribute($name)
Delete the named graph attribute.
set_graph_attributes
$g->get_graph_attributes($attr)
Set all the attributes of the graph from the anonymous hash $attr.
NOTE: any attributes beginning with an underscore ("_") are reserved for the internal use of the
Graph module.
get_graph_attributes
$attr = $g->get_graph_attributes()
Return all the attributes of the graph as an anonymous hash.
get_graph_attribute_names
@name = $g->get_graph_attribute_names()
Return the names of graph attributes.
get_graph_attribute_values
@value = $g->get_graph_attribute_values()
Return the values of graph attributes.
has_graph_attributes
$g->has_graph_attributes()
Return true if the graph has any attributes, false if not.
delete_graph_attributes
$g->delete_graph_attributes()
Delete all the attributes of the named graph.
Weighted
As convenient shortcuts the following methods add, query, and manipulate the attribute "weight" with the
specified value to the respective Graph elements.
add_weighted_edge
$g->add_weighted_edge($u, $v, $weight)
add_weighted_edges
$g->add_weighted_edges($u1, $v1, $weight1, ...)
add_weighted_path
$g->add_weighted_path($v1, $weight1, $v2, $weight2, $v3, ...)
add_weighted_vertex
$g->add_weighted_vertex($v, $weight)
add_weighted_vertices
$g->add_weighted_vertices($v1, $weight1, $v2, $weight2, ...)
delete_edge_weight
$g->delete_edge_weight($u, $v)
delete_vertex_weight
$g->delete_vertex_weight($v)
get_edge_weight
$g->get_edge_weight($u, $v)
get_vertex_weight
$g->get_vertex_weight($v)
has_edge_weight
$g->has_edge_weight($u, $v)
has_vertex_weight
$g->has_vertex_weight($v)
set_edge_weight
$g->set_edge_weight($u, $v, $weight)
set_vertex_weight
$g->set_vertex_weight($v, $weight)
Isomorphism
Two graphs being isomorphic means that they are structurally the same graph, the difference being that
the vertices might have been renamed or substituted. For example in the below example $g0 and $g1 are
isomorphic: the vertices "b c d" have been renamed as "z x y".
$g0 = Graph->new;
$g0->add_edges(qw(a b a c c d));
$g1 = Graph->new;
$g1->add_edges(qw(a x x y a z));
In the general case determining isomorphism is NP-hard, in other words, really hard (time-consuming), no
other ways of solving the problem are known than brute force check of of all the possibilities (with
possible optimization tricks, of course, but brute force still rules at the end of the day).
A very rough guess at whether two graphs could be isomorphic is possible via the method
could_be_isomorphic
$g0->could_be_isomorphic($g1)
If the graphs do not have the same number of vertices and edges, false is returned. If the distribution
of in-degrees and out-degrees at the vertices of the graphs does not match, false is returned.
Otherwise, true is returned.
What is actually returned is the maximum number of possible isomorphic graphs between the two graphs,
after the above sanity checks have been conducted. It is basically the product of the factorials of the
absolute values of in-degrees and out-degree pairs at each vertex, with the isolated vertices ignored
(since they could be reshuffled and renamed arbitrarily). Note that for large graphs the product of
these factorials can overflow the maximum presentable number (the floating point number) in your computer
(in Perl) and you might get for example Infinity as the result.
Miscellaneous
betweenness
%b = $g->betweenness
Returns a map of vertices to their Freeman's betweennesses:
C_b(v) = \sum_{s \neq v \neq t \in V} \frac{\sigma_{s,t}(v)}{\sigma_{s,t}}
It is described in:
Freeman, A set of measures of centrality based on betweenness, http://arxiv.org/pdf/cond-mat/0309045
and based on the algorithm from:
"A Faster Algorithm for Betweenness Centrality"
clustering_coefficient
$gamma = $g->clustering_coefficient()
($gamma, %clustering) = $g->clustering_coefficient()
Returns the clustering coefficient gamma as described in
Duncan J. Watts and Steven Strogatz, Collective dynamics of 'small-world' networks, https://web.archive.org/web/20120616204225/http://audiophile.tam.cornell.edu/SS_nature_smallworld.pdf
In scalar context returns just the average gamma, in list context returns the average gamma and a
hash of vertices to clustering coefficients.
Returns an empty list (and therefore undefined in scalar context) if the graph has no vertices.
subgraph_by_radius
$s = $g->subgraph_by_radius(@v, $radius);
Returns a subgraph representing the ball of $radius around the given vertices (breadth-first search).
The "expect" methods can be used to test a graph and croak if the graph call is not as expected.
expect_acyclic
expect_dag
expect_directed
expect_hyperedged
expect_multiedge
expect_multiedged
expect_multivertex
expect_multivertexed
expect_no_args
expect_non_multiedge
expect_non_multiedged
expect_non_multivertex
expect_non_multivertexed
expect_non_unionfind
expect_undirected
In many algorithms it is useful to have a value representing the infinity. The Graph provides (and
itself uses):
Infinity
(Not exported, use Graph::Infinity explicitly)
Size Requirements
A graph takes up at least 1172 bytes of memory.
A vertex takes up at least 100 bytes of memory.
An edge takes up at least 400 bytes of memory.
(A Perl scalar value takes 16 bytes, or 12 bytes if it's a reference.)
These size approximations are very approximate and optimistic (they are based on total_size() of
Devel::Size). In real life many factors affect these numbers, for example how Perl is configured. The
numbers are for a 32-bit platform and for Perl 5.8.8.
Roughly, the above numbers mean that in a megabyte of memory you can fit for example a graph of about
1000 vertices and about 2500 edges.
Hyperedges, hypergraphs
BEWARE: this is a rather thinly tested feature, and the theory is even less so. Do not expect this to
stay as it is (or at all) in future releases.
NOTE: most usual graph algorithms (and basic concepts) break horribly (or at least will look funny) with
these hyperthingies. Caveat emptor.
Hyperedges are edges that connect a number of vertices different from the usual two.
Hypergraphs are graphs with hyperedges.
To enable hyperness when constructing Graphs use the "hyperedged" attribute:
my $h = Graph->new(hyperedged => 1);
To test for hyperness of a graph use the
is_hyperedged
hyperedged
$g->is_hyperedged
$g->hyperedged
Edges in hypergraphs are either directed or undirected, as with simple graphs. If undirected, the edge is
a blob of 0 or more vertices. For directed, the set of heads and set of tails are also possibly empty. In
general, hypergraphs are simply generalisations of simple-graph ideas, with some of the arbitrary
limitations removed.
For more information on directed hypergraphs, see Directed Hypergraphs and Applications, Gallo-Longo-
Pallottino-Nguyen <https://doi.org/10.1016/0166-218X%2893%2990045-P>. It defines hyperarcs (directed
edges in a hypergraph) as ordered pairs of subsets of V, and hyperedges (undirected) as single subsets of
V. Since sets are unordered and elements within them are unique, this implies that the only valuable use
for hypergraphs is where in a given connection entity (edge or arc), each vertex only appears at most
once. Additionally, how the "hyper" property of edges works may change. The underpinning notion is that
each edge will be considered an entry in an incidence matrix (dimensions |V| x |E|), with values of
either (0, 1=participating) for undirected (hyperedges), or (-1=tail, 0, 1=head) for directed (hyperarcs)
against each vertex.
An extension to this is that to extend directed multigraphs with self-loops (aka "quivers") to
hypergraphs, the incidence-matrix values will instead be a bitfield, with bit 0 being participation in
the tail, and bit 1 in the head.
DIAGNOSTICS
• Graph::...Map...: arguments X expected Y ...
If you see these (more user-friendly error messages should have been triggered above and before
these) please report any such occurrences, but in general you should be happy to see these since it
means that an attempt to call something with a wrong number of arguments was caught in time.
• Graph::add_edge: graph is not hyperedged ...
Maybe you used add_weighted_edge() with only the two vertex arguments.
• Not an ARRAY reference at lib/Graph.pm ...
One possibility is that you have code based on Graph 0.2xxxx that assumes Graphs being blessed hash
references, possibly also assuming that certain hash keys are available to use for your own purposes.
In Graph 0.50 none of this is true. Please do not expect any particular internal implementation of
Graphs. Use inheritance and graph/vertex/edge attributes instead.
Another possibility is that you meant to have objects (blessed references) as graph vertices, but
forgot to use "refvertexed" (see "refvertexed") when creating the graph.
• Deep recursion on subroutine "Graph::_biconnectivity_dfs" at ...
If you have more than 100 vertices, the recursive algorithm will trigger Perl's recursion protection.
If you set environment variable "GRAPH_ALLOW_RECURSION" to a true value, this protection will be
disabled, e.g.:
$ GRAPH_ALLOW_RECURSION=1 perl -Ilib util/grand.pl --test=bcc 101
ACKNOWLEDGEMENTS
All bad terminology, bugs, and inefficiencies are naturally mine, all mine, and not the fault of the
below.
Thanks to Nathan Goodman and Andras Salamon for bravely betatesting my pre-0.50 code. If they missed
something, that was only because of my fiendish code.
The following literature for algorithms and some test cases:
• Algorithms in C, Third Edition, Part 5, Graph Algorithms, Robert Sedgewick, Addison Wesley
• Introduction to Algorithms, First Edition, Cormen-Leiserson-Rivest, McGraw Hill
• Graphs, Networks and Algorithms, Dieter Jungnickel, Springer
SEE ALSO
Persistent/Serialized graphs? You want to read/write Graphs? See the Graph::Reader and Graph::Writer in
CPAN.
AUTHOR
Jarkko Hietaniemi jhi@iki.fi Now being maintained by Neil Bowers <neilb@cpan.org>
COPYRIGHT AND LICENSE
Copyright (c) 1998-2014 Jarkko Hietaniemi. All rights reserved.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5
programming language system itself.