NAME

       alignment-info - Show useful statistics about the alignment.

SYNOPSIS

       alignment-info alignment-file [tree-file] [OPTIONS]

DESCRIPTION

       Show useful statistics about the alignment.

ALLOWED OPTIONS:

       -h, –help
              produce help message

       –align arg
              file with sequences and initial alignment

       –tree arg
              file with initial tree

       –alphabet arg
              specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons

       -e, –erase-empty-columns
              Remove columns with no characters (all gaps).

       -N, –show-names
              Print the sequence-names and exit

       -L, –show-lengths
              Print the sequence-lengths and exit

REPORTING BUGS:

       BAli-Phy online help: http://www.bali-phy.org/docs.php.

       Please send bug reports to bali-phy-users@googlegroups.com.

AUTHORS

       Benjamin Redelings.

                                                    Feb 2018                                   alignment-info(1)