NAME

       csv2xml,fsa2xml,gbf2ref,gbf2xml,ini2xml,json2xml,scn2xml,tbl2xml,toml2xml,yaml2xml - XMLify

SYNOPSIS

       csv2xml|scn2xml|tbl2xml   [-set tag]  [-rec tag]  [-skip N]  [-header]  [-lower|-upper]  [-indent|-flush]
       columnName1 ...

       fsa2xml

       gbf2ref

       gbf2xml

       ini2xml

       json2xml [-set tag] [-rec tag] [-nest flat|recurse|plural|singular|depth|element]

       toml2xml

       yaml2xml

DESCRIPTION

       These commands all simply invoke corresponding transmute(1) modes; each  reads  a  stream  of  data  from
       standard  input,  converts  it  to  XML  suitable for -path navigation, and writes the result to standard
       output.  Specifically:

       csv2xml   corresponds to transmute -c2x, converting comma-separated values to XML.

       fsa2xml   corresponds to transmute -f2x, converting FASTA streams to XML.

       gbf2ref   corresponds to transmute -g2r, converting from GenBank/GenPept  flatfile  format  to  Reference
                 Index XML.

       gbf2xml   corresponds to transmute -g2x, converting from GenBank/GenPept flatfile format to INSDSeq XML.

       ini2xml   corresponds to transmute -i2x, converting from .ini configuration file format to XML.

       json2xml  corresponds to transmute -j2x, converting JSON to XML.

       scn2xml   corresponds to transmute -s2x, converting a semicolon-delimited table to XML.

       tbl2xml   corresponds to transmute -t2x, converting a tab-delimited table to XML.

       toml2xml  corresponds to transmute -m2x, converting from TOML format to XML.

       yaml2xml  corresponds to transmute -y2x, converting from YAML format to XML.

       There  is  also  an  analogous  asn2xml wrapper corresponding to transmute -a2x (converting text ASN.1 to
       XML), but Debian systems install it to /usr/lib/ncbi-entrez-direct/bin  to  avoid  conflicting  with  the
       ncbi-tools-bin package's asn2xml(1).

OPTIONS

       See transmute(1).

SEE ALSO

       asn2ref(1),  download-flatfile(1),  gbf2facds(1),  gbf2fsa(1),  gbf2info(1),  gbf2tbl(1),  gene2range(1),
       gff2xml(1), jsonl2xml(1), ref2pmid(1), refseq-nm-cds(1), transmute(1), xml2fsa(1), xml2tbl(1), xtract(1).

NCBI                                               2025-05-26                                         CSV2XML(1)