Provided by: htcondor_8.0.5~dfsg.1-1ubuntu1_amd64 
Name
condor_qsub Queue - jobs that use PBS/SGE-style submission
Synopsis
condor_qsub [ -- version]
condor_qsub[Specific options] [Directory options] [Environmental options] [File options]
[Notification options] [Resource options] [Status options] [Submission options]
commandfile
Description
condor_qsubsubmits an HTCondor job. This job is specified in a PBS/Torque style or an SGE
style. condor_qsubpermits the submission of dependent jobs without the need to specify the
full dependency graph at submission time. Doing things this way is neither as efficient as
HTCondor's DAGMan, nor as functional as SGE's qsubor qalter. condor_qsubserves as a
minimal translator to be able to use software originally written to interact with PBS,
Torque, and SGE in an HTCondor pool.
condor_qsubattempts to behave like qsub. Less than half of the qsubfunctionality is
implemented. Option descriptions describe the differences between the behavior of qsuband
condor_qsub. qsuboptions not listed here are not supported. Some concepts present in PBS
and SGE do not apply to HTCondor, and so these options are not implemented.
For a full listing of qsuboptions, please see
POSIX
: http://pubs.opengroup.org/onlinepubs/9699919799/utilities/qsub.html
SGE
: http://gridscheduler.sourceforge.net/htmlman/htmlman1/qsub.html
PBS/Torque
: http://docs.adaptivecomputing.com/torque/4-1-3/Content/topics/commands/qsub.htm
condor_qsubaccepts either command line options or the single file, commandfile, that
contains all of the commands.
condor_qsubdoes the opposite of job submission within the griduniverse batchgrid type,
which takes HTCondor jobs submitted with HTCondor syntax and submits them to PBS, SGE, or
LSF.
Options
-a date_time
(Submission option) Specify a deferred execution date and time. The PBS/Torque syntax
of date_timeis a string in the form [[[[CC]YY]MM]DD]hhmm[.SS]. The portions of this
string which are optional are CC, YY, MM, DD, and SS. For SGE, MMand DDare notoptional.
For PBS, MMand DDare optional. condor_qsub follows the PBS style.
-A account_string
(Status option) Uses group accounting where the string account_stringis the accounting
group associated with this job. Unlike SGE, there is no default group of "sge" .
-b y|n
(Submission option) Using the SGE definition of its -boption, a value of ycauses
condor_qsub to notparse the file for additional condor_qsub commands. The default value
is n. If the command line argument -f filenameis also specified, it negates a value of
y.
-c checkpoint_option
(Submission option) For standard universe jobs only, controls the how HTCondor produces
checkpoints. checkpoint_optionsmay be one of
n or N
Do not produce checkpoints.
s or S
Do not produce periodic checkpoints. A job will only produce a checkpoint when the
job is evicted.
More options may be implemented in the future.
--condor-keep-files
(Specific option) Directs HTCondor to notremove temporary files generated by
condor_qsub , such as HTCondor submit files and sentinel jobs. These temporary files
may be important for debugging.
-cwd
(Directory option) Specifies the initial directory in which the job will run to be the
current directory from which the job was submitted. This sets initialdirfor
condor_submit.
-d pathor -wd path
(Directory option) Specifies the initial directory in which the job will run to be
path. This sets initialdirfor condor_submit.
-e filename
(File option) Specifies the condor_submitcommand error, the file where stderr is
written. If not specified, set to the default name of <commandfile>.e<ClusterId> ,
where <commandfile> is the condor_qsub argument, and <ClusterId> is the job attribute
ClusterId assigned for the job.
--f qsub_file
(Specific option) Parse qsub_fileto search for and set additional
condor_submitcommands. Within the file, commands will appear as #PBS or #SGE .
condor_qsub will parse the batch file listed as qsub_file.
-h
(Status option) Placed submitted job directly into the hold state.
--help
(Specific option) Print usage information and exit.
-hold_jid <jid>
(Status option) Submits a job in the hold state. This job is released only when a
previously submitted job, identified by its cluster ID as <jid>, exits successfully.
Successful completion is defined as not exiting with exit code 100. In implementation,
there are three jobs that define this SGE feature. The first job is the previously
submitted job. The second job is the newly submitted one that is waiting for the first
to finish successfully. The third job is what SGE calls a sentineljob; this is an
HTCondor local universe job that watches the history for the first job's exit code.
This third job will exit once it has seen the exit code and, for a successful
termination of the first job, run condor_releaseon the second job. If the first job is
an array job, the second job will only be released after all individual jobs of the
first job have completed.
-i [hostname:]filename
(File option) Specifies the condor_submitcommand input, the file from which stdin is
read.
-j characters
(File option) Acceptable characters for this option are e , o , and n . The only
sequence that is relevant is eo ; it specifies that both standard output and standard
error are to be sent to the same file. The file will be the one specified by the
-ooption, if both the -oand -eoptions exist. The file will be the one specified by the
-eoption, if only the -eoption is provided. If neither the -onor the -eoptions are
provided, the file will be the default used for the -ooption.
-l resource_spec
(Resource option) Specifies requirements for the job, such as the amount of RAM and the
number of CPUs. Only PBS-style resource requests are supported. resource_specis a comma
separated list of key/value pairs. Each pair is of the form resource_name=value .
resource_name and value may be
resource_name value DescriptionarchstringSets Arch machine attribute. Enclose in
double quotes.filesizeDisk space requested.hoststringHost machine on which the job must
run.memsizeAmount of memory requested.nodes {<node_count> | <hostname>} [:ppn=<ppn>]
[:gpus=<gpu>] [:<property> [:<property>] ...] [+ ...] Number and/or properties of nodes
to be used. For examples, please see
http://docs.adaptivecomputing.com/torque/4-1-3/Content/topics/2-jobs/requestingRes.htm#qsubopsysstringSets
OpSys machine attribute. Enclose in double quotes.procsintegerNumber of CPUs
requested.A size value is an integer specified in bytes, following the PBS/Torque
default. Append Kb , Mb , Gb , or Tb to specify the value in quantities greater
than bytes.
-m a|e|n
(Notification option) Identify when HTCondor sends notification e-mail. If a, send e-
mail when the job terminates abnormally. If e, send e-mail when the job terminates. If
n, never send e-mail.
-M e-mail_address
(Notification option) Sets the destination address for HTCondor e-mail.
-o filename
(File option) Specifies the condor_submitcommand output, the file where stdout is
written. If not specified, set to the default name of <commandfile>.o<ClusterId> ,
where <commandfile> is the condor_qsub argument, and <ClusterId> is the job attribute
ClusterId assigned for the job.
-p integer
(Status option) Sets the prioritysubmit command for the job, with 0 being the default.
Jobs with higher numerical priority will run before jobs with lower numerical priority.
--print
(Specific option) Send to stdout the contents of the HTCondor submit description file
that condor_qsub generates.
-r y|n
(Status option) The default value of yimplements the default HTCondor policy of
assuming that jobs that do not complete are placed back in the queue to be run again.
When n, job submission is restricted to only running the job if the job ClassAd
attribute NumJobStarts is currently 0. This identifies the job as not re-runnable,
limiting it to start once.
-S shell
(Submission option) Specifies the path and executable name of a shell. Alters the
HTCondor submit description file produced, such that the executable becomes a wrapper
script. Within the submit description file will be executable = <shell> and arguments
= <commandfile> .
-t start [-stop:step]
(Submission option) Queues a set of nearly identical jobs. The SGE-style syntax is
supported. start, stop, and stepare all integers. startis the starting index of the
jobs, stopis the ending index (inclusive) of the jobs, and stepis the step size through
the indices. Note that using more than one processor or node in a job will not work
with this option.
--test
(Specific option) With the intention of testing a potential job submission, parse files
and commands to generate error output. Produces, but then removes the HTCondor submit
description file. Never submits the job, even if no errors are encountered.
-v variable list
(Environmental option) Used to set the submit command environmentfor the job. variable
listis as that defined for the submit command. Note that the syntax needed is
specialized to deal with quote marks and white space characters.
-V
(Environmental option) Sets getenv = True in the submit description file.
-W attr_name=attr_value[,attr_name=attr_value...]
(File option) PBS/Torque supports a number of attributes. However, condor_qsub only
supports the names stageinand stageoutfor attr_name. The format of attr_valuefor
stageinand stageoutis local_file@hostname:remote_file[,...] and we strip it to
remote_file[,...] . HTCondor's file transfer mechanism is then used if needed.
--version
(Specific option) Print version information for the condor_qsub program and exit. Note
that condor_qsub has its own version numbers which are separate from those of HTCondor.
Exit Status
condor_qsubwill exit with a status value of 0 (zero) upon success, and it will exit with
the value 1 (one) upon failure to submit a job.
Author
Center for High Throughput Computing, University of Wisconsin-Madison
Copyright
Copyright (C) 1990-2013 Center for High Throughput Computing, Computer Sciences
Department, University of Wisconsin-Madison, Madison, WI. All Rights Reserved. Licensed
under the Apache License, Version 2.0.
January 2014 condor_qsub(1)