NAME

       gmxdump - makes binary files human readable

       VERSION 4.6.5

SYNOPSIS

       gmxdump  -s  topol.tpr -f traj.xtc -e ener.edr -cp state.cpt -p topol.top -mtx hessian.mtx
       -om grompp.mdp -[no]h -[no]version -nice int -[no]nr -[no]sys

DESCRIPTION

        gmxdump reads a run input file ( .tpa/ .tpr/ .tpb), a trajectory ( .trj/ .trr/ .xtc),  an
       energy file ( .ene/ .edr), or a checkpoint file ( .cpt) and prints that to standard output
       in a readable format.  This program is essential for checking your run input file in  case
       of problems.

       The  program can also preprocess a topology to help finding problems.  Note that currently
       setting  GMXLIB is the only way to customize directories used for searching include files.

FILES

       -s topol.tpr Input, Opt.
        Run input file: tpr tpb tpa

       -f traj.xtc Input, Opt.
        Trajectory: xtc trr trj gro g96 pdb cpt

       -e ener.edr Input, Opt.
        Energy file

       -cp state.cpt Input, Opt.
        Checkpoint file

       -p topol.top Input, Opt.
        Topology file

       -mtx hessian.mtx Input, Opt.
        Hessian matrix

       -om grompp.mdp Output, Opt.
        grompp input file with MD parameters

OTHER OPTIONS

       -[no]hno
        Print help info and quit

       -[no]versionno
        Print version info and quit

       -nice int 0
        Set the nicelevel

       -[no]nryes
        Show index numbers in output (leaving them out makes comparison  easier,  but  creates  a
       useless topology)

       -[no]sysno
        List  the atoms and bonded interactions for the whole system instead of for each molecule
       type

KNOWN PROBLEMS

       - Position restraint output from -sys -s is broken

SEE ALSO

       gromacs(7)

       More information about GROMACS is available at <http://www.gromacs.org/>.

                                          Mon 2 Dec 2013                               gmxdump(1)