NAME

       hmm2index - create a binary SSI index for an HMM database

SYNOPSIS

       hmm2index [options] database

DESCRIPTION

       hmm2index is a utility that creates a binary SSI ("squid sequence index" format) index for
       an HMM database file called database.  The new index file is named database.ssi.   An  SSI
       index  file  is  required  for  hmm2fetch  to work, and also for the PVM implementation of
       hmm2pfam.

OPTIONS

       -h     Print brief help; includes version number and summary  of  all  options,  including
              expert options.

SEE ALSO

       Master man page, with full list of and guide to the individual man pages: see hmmer2(1).

       For         complete         documentation,        see        the        user        guide
       (ftp://selab.janelia.org/pub/software/hmmer/2.3.2/Userguide.pdf); or  see  the  HMMER  web
       page, http://hmmer.janelia.org/.

COPYRIGHT

       Copyright (C) 1992-2003 HHMI/Washington University School of Medicine.
       Freely distributed under the GNU General Public License (GPL).
       See the file COPYING in your distribution for details on redistribution conditions.

AUTHOR

       Sean Eddy
       HHMI/Dept. of Genetics
       Washington Univ. School of Medicine
       4566 Scott Ave.
       St Louis, MO 63110 USA
       http://www.genetics.wustl.edu/eddy/