NAME

       mia-2dsegshift - Translate a segmentation by the given amount.

SYNOPSIS

       mia-2dsegshift -i <in-file> -o <out-file> [options]

DESCRIPTION

       mia-2dsegshift  This  program  move the segmentation(s) of an image series by using a shift that is equal
       for all slices. The program also may remove images from the begin of the series. The program can be  used
       to correct the segmentation of the images if the images where cropped.

OPTIONS

              -i --in-file=(required)
                     input segmentation set

              -o --out-file=(required)
                     input segmentation set

              -g --image-file=crop
                     output image filename base

              -S --shift=[0,0]
                     shift of segmentation

              -k --skip=2
                     skip frames at the beginning

   Help & Info
              -V --verbose=warning
                     verbosity  of  output,  print  messages  of  given  level  and higher priorities. Supported
                     priorities starting at lowest level are:
                        info ‐ Low level messages
                        warning ‐ Warnings
                        error ‐ Report errors
                        fail ‐ Report test failures
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower  or  equal  to
                     the number of logical processor cores in the machine. (-1: automatic estimation).

EXAMPLE

       Shift  the  segmentations  of  a set segement.set by -20 pixels in horizontal direction and -30 pixels in
       vertical direction (as if the images where cropped starting at (20,30) and store it in translate.set. The
       shiftes files are named translatedXXXX.png

       mia-2dsegshift -i segment.set -o translate.set -g translated -S "<20,30>"

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This software is Copyright (c) 1999‐2013 Leipzig, Germany and Madrid, Spain.  It comes  with   ABSOLUTELY
       NO  WARRANTY   and   you  may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3
       (or later). For more information run the program with the option '--copyright'.

2.0.10                                           25 January 2014                               mia-2dsegshift(1)