NAME

       mia-2dsegshift - Translate a segmentation by the given amount.

SYNOPSIS

       mia-2dsegshift -i <in-file> -o <out-file> [options]

DESCRIPTION

       mia-2dsegshift  This  program move the segmentation(s) of an image series by using a shift
       that is equal for all slices. The program also may remove images from  the  begin  of  the
       series.  The  program  can be used to correct the segmentation of the images if the images
       where cropped.

OPTIONS

              -i --in-file=(required)
                     input segmentation set

              -o --out-file=(required)
                     input segmentation set

              -g --image-file=crop
                     output image filename base

              -S --shift=[0,0]
                     shift of segmentation

              -k --skip=2
                     skip frames at the beginning

   Help & Info
              -V --verbose=warning
                     verbosity of output, print messages of given level  and  higher  priorities.
                     Supported priorities starting at lowest level are:
                        info ‐ Low level messages
                        warning ‐ Warnings
                        error ‐ Report errors
                        fail ‐ Report test failures
                        message ‐ Normal messages
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or equal to the number of logical  processor  cores  in  the  machine.  (-1:
                     automatic estimation).

EXAMPLE

       Shift  the  segmentations  of a set segement.set by -20 pixels in horizontal direction and
       -30 pixels in vertical direction (as if the images where cropped starting at  (20,30)  and
       store it in translate.set. The shiftes files are named translatedXXXX.png

       mia-2dsegshift -i segment.set -o translate.set -g translated -S "<20,30>"

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software  is  Copyright  (c) 1999‐2013 Leipzig, Germany and Madrid, Spain.  It comes
       with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms  of  the  GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.