Provided by: cpl-plugin-vimos-doc_2.9.9+dfsg-2_all 
NAME
vmifuscience - Extract spectra from an IFU scientific exposure.
SYNOPSIS
esorex vmifuscience [OPTIONS] FILE.sof
DESCRIPTION
This recipe extracts IFU scientific spectra using the input extraction mask, after
aligning it to the brightest fiber spectra detected on the input exposure. The extracted
spectra are then resampled at a constant wavelength step, after aligning the input
wavelength calibration to the positions of a set of identified sky lines. The extracted
spectra are eventually corrected for the relative differences in transmission from fiber
to fiber.
Input files:
DO category: Type: Explanation: Required:
IFU_SCIENCE Raw Scientific spectra Y
MASTER_BIAS Calib Master bias Y
IFU_TRACE Calib Extraction mask Y
IFU_IDS Calib Wavelength calibration Y
IFU_TRANSMISSION Calib Transmission correction Y
EXTINCT_TABLE Calib Atmospheric extinction .
IFU_SPECPHOT_TABLE Calib Response curve .
CCD_TABLE Calib Bad pixel table .
Output files:
DO category: Data type: Explanation:
IFU_SCIENCE_REDUCED FITS image Reduced scientific spectra
IFU_SCIENCE_FLUX_REDUCED FITS image Reduced scientific spectra
IFU_FOV FITS image Reconstructed IFU field-of-view
IFU_SKY_TRACE FITS table Science aligned extraction mask
Only if sky alignment is requested:
IFU_SKY_IDS FITS table Sky aligned wavelength solution The extraction
mask, the wavelength calibration, and the relative transmission table, are those generated
by the recipe vmifucalib. A CCD table must be specified only if a bad pixel cleaning is
requested.
For more details, please refer to the VIMOS Pipeline User´s Guide.
OPTIONS
--BiasMethod <str>
Bias removal method. (str; default: ´Zmaster´). The full name of this option for
the EsoRex configuration file is vimos.Parameters.bias.removing.method [default =
Zmaster].
--CleanBadPixel <bool>
Bad pixel correction on master flat field. (bool; default: False). The full name of
this option for the EsoRex configuration file is vimos.Parameters.badpixel.clean
[default = False].
--ApplyTransmission <bool>
Apply transmission correction to extracted scientific spectra (bool; default:
True). The full name of this option for the EsoRex configuration file is
vimos.Parameters.apply.transmission [default = True].
--CalibrateFlux <bool>
Extracted spectra are flux calibrated. (bool; default: False). The full name of
this option for the EsoRex configuration file is vimos.Parameters.flux.calibration
[default = False].
--UseSkylines <bool>
Use sky lines to refine the wavelength calibration (bool; default: True). The full
name of this option for the EsoRex configuration file is vimos.Parameters.sky.align
[default = True].
--UseSkyIndividual <bool>
Use sky lines to refine the wavelength calibration individually for each spectrum
(bool; default: False). The full name of this option for the EsoRex configuration
file is vimos.Parameters.sky.individual [default = False].
--ComputeQC <bool>
Compute QC1 parameters (bool; default: False). The full name of this option for the
EsoRex configuration file is vimos.Parameters.quality.enable [default = False].
Note that it is possible to create a configuration file containing these options, along
with suitable default values. Please refer to the details provided by the 'esorex --help'
command.
SEE ALSO
The full documentation for the vimos pipeline can be downloaded as a PDF file using the
following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/vimos/vimos-pipeline-manual-6.9.pdf
An overview over the existing ESO pipelines can be found on the web page
http://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See
http://packages.python.org/python-cpl/index.html for further information.
The other recipes of the vimos pipeline are vmifucombinecube(7), vmifucalib(7),
vmimflatsky(7), vmspflat(7), vmmosobsstare(7), vmimflatscreen(7), vmimpreimaging(7),
vmimcalphot(7), vmmoscombine(7), vmimstandard(7), vmmosobsjitter(7), vmimobsstare(7),
vmimobsjitter(7), vmspphot(7), vmdet(7), vmmosscience(7), vmmosstandard(7),
vmspcaldisp(7), vmifustandard(7), vmbias(7), vmmoscalib(7), vmifucombine(7), vmdark(7)
VERSION
vmifuscience 2.9.9
AUTHOR
ESO VIMOS Pipeline Team <usd-help@eso.org>
BUG REPORTS
Please report any problems to usd-help@eso.org. Alternatively, you may send a report to
the ESO User Support Department <usd-help@eso.org>.
LICENSE
This file is part of the VIMOS Instrument Pipeline Copyright (C) 2002-2005 European
Southern Observatory
This program is free software; you can redistribute it and/or modify it under the terms of
the GNU General Public License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY;
without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program;
if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
MA 02110-1301 USA