Provided by: cpl-plugin-kmos-doc_1.3.17+dfsg-1_all 
NAME
kmos_extract_spec - Extract a spectrum from a cube
SYNOPSIS
esorex kmos_extract_spec [OPTIONS] FILE.sof
DESCRIPTION
This recipe extracts a spectrum from a datacube. The datacube is with or without noise). The output will
be a similarly formatted FITS file.
Input files:
DO KMOS
category Type Explanation Required #Frames
-------- ----- ----------- -------- -------
<none or any> F3I The datacubes Y 1
<none or any> F2I The mask N 0,1
Output files:
DO KMOS
category Type Explanation
-------- ----- -----------
EXTRACT_SPEC F1I Extracted spectrum
EXTRACT_SPEC_MASK F2I (optional, if --save_mask=true and
--mask_method=´optimal´: The calculated mask)
OPTIONS
--mask_method <str>
Method used : mask, integrated or optimal (str; default: ´integrated´). The full name of this
option for the EsoRex configuration file is kmos.kmos_extract_spec.mask_method [default =
integrated].
--centre <str>
The centre of the circular mask (pixel) (str; default: ´7.5,7.5´). The full name of this option
for the EsoRex configuration file is kmos.kmos_extract_spec.centre [default = 7.5,7.5].
--radius <float>
The radius of the circular mask (pixel) (float; default: 3.0). The full name of this option for
the EsoRex configuration file is kmos.kmos_extract_spec.radius [default = 3.0].
--save_mask <bool>
Flag to save the mask (bool; default: False). The full name of this option for the EsoRex
configuration file is kmos.kmos_extract_spec.save_mask [default = False].
--cmethod <str>
Apply "average", "median", "sum", "min_max." or "ksigma". (str; default: ´ksigma´). The full name
of this option for the EsoRex configuration file is kmos.kmos_extract_spec.cmethod [default =
ksigma].
--cpos_rej <float>
The positive rejection threshold for kappa-sigma-clipping (sigma). (float; default: 3.0). The
full name of this option for the EsoRex configuration file is kmos.kmos_extract_spec.cpos_rej
[default = 3.0].
--cneg_rej <float>
The negative rejection threshold for kappa-sigma-clipping (sigma). (float; default: 3.0). The
full name of this option for the EsoRex configuration file is kmos.kmos_extract_spec.cneg_rej
[default = 3.0].
--citer <long>
The number of iterations for kappa-sigma-clipping. (long; default: 3). The full name of this
option for the EsoRex configuration file is kmos.kmos_extract_spec.citer [default = 3].
--cmax <long>
The number of maximum pixel values to clip with min/max-clipping. (long; default: 1). The full
name of this option for the EsoRex configuration file is kmos.kmos_extract_spec.cmax [default =
1].
--cmin <long>
The number of minimum pixel values to clip with min/max-clipping. (long; default: 1). The full
name of this option for the EsoRex configuration file is kmos.kmos_extract_spec.cmin [default =
1].
Note that it is possible to create a configuration file containing these options, along with suitable
default values. Please refer to the details provided by the 'esorex --help' command.
SEE ALSO
The full documentation for the kmos pipeline can be downloaded as a PDF file using the following URL:
ftp://ftp.eso.org/pub/dfs/pipelines/kmos/kmos-pipeline-manual-2.9.pdf
An overview over the existing ESO pipelines can be found on the web page
http://www.eso.org/sci/software/pipelines/.
Basic documentation about the EsoRex program can be found at the esorex (1) man page.
It is possible to call the pipelines from python using the python-cpl package. See
http://packages.python.org/python-cpl/index.html for further information.
The other recipes of the kmos pipeline are kmo_arithmetic(7), kmo_copy(7), kmo_fit_profile(7),
kmo_fits_check(7), kmo_fits_strip(7), kmo_illumination_flat(7), kmo_make_image(7), kmo_noise_map(7),
kmo_rotate(7), kmo_shift(7), kmo_sky_mask(7), kmo_stats(7), kmos_combine(7), kmos_dark(7), kmos_flat(7),
kmos_gen_reflines(7), kmos_illumination(7), kmos_reconstruct(7), kmos_sci_red(7), kmos_sky_tweak(7),
kmos_std_star(7), kmos_test(7), kmos_wave_cal(7)
VERSION
kmos_extract_spec 1.3.17
AUTHOR
Alex Agudo Berbel, Y. Jung <usd-help@eso.org>
BUG REPORTS
Please report any problems to usd-help@eso.org. Alternatively, you may send a report to the ESO User
Support Department <usd-help@eso.org>.
LICENSE
This file is part of the CRIRES Instrument Pipeline Copyright (C) 2002,2003 European Southern Observatory
This program is free software; you can redistribute it and/or modify it under the terms of the GNU
General Public License as published by the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public
License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write
to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
kmos_extract_spec 1.3.17 KMOS_EXTRACT_SPEC(7)