NAME

       chainsaw - Cut a gene tree based on a reconciliation

SYNOPSIS

       chainsaw [OPTIONS] reconciled-gene-tree  species-tree

DESCRIPTION

       reconciled-gene-tree  is the filename of the file containing trees in PRIME format. Notice
       that the node id is optional and if left out all species nodeswill be used recursively.

       species-tree is the species tree

OPTIONS

       --help Display help (this text).

       -V, --version
              Print version and exit

       -g, --guest-tree-format primeOrHybrid|inputxml
              The input format. Default is primeOrHybrid

       -h, --host-tree-format primeOrHybrid|inputxml
              The input format of the host tree. Default is primeOrHybrid

       -x, --node-name=STRING
              A named species node to cut at

       -i, --node-id=INT
              The numerical id of a species node to cut at

EXIT STATUS

       0      Successful program execution.

       1      Some error occurred

URL

       The prime-phylo home page: http://prime.sbc.su.se

SEE ALSO

       primeDTLSR(1),   primeDLRS(1),   primeGEM(1),   showtree(1),   reconcile(1),    reroot(1),
       tree2leafnames(1), treesize(1)