oracular (7) openms-common.7.gz

Provided by: openms-common_2.6.0+cleaned1-4build4_all bug

NAME
       openms-common - library for LC/MS data management and analysis - common files


DESCRIPTION
       This  manual  page  documents  briefly  the  openms-common  package that ships shared data for the OpenMS
       software framework. OpenMS offers an infrastructure for  the  development  of  mass  spectrometry-related
       software  and powerful 2D and 3D visualization solutions. OpenMS offers analyses for various quantitation
       protocols, including label-free quantitation, SILAC, iTRAQ, SRM, SWATH… It provides  build-in  algorithms
       for  de-novo identification and database search, as well as adapters to other state-of-the art tools like
       X!Tandem, Mascot, OMSSA… OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data and
       supports  easy  integration  of tools into workflow engines like Knime, Galaxy, WS-Pgrade, and TOPPAS via
       the TOPPtools concept and a unified parameter handling.


BIBLIOGRAPHICAL REFERENCE TO BE CITED
       Marc Sturm, Andreas Bertsch, Clemens Gröpl, Andreas Hildebrandt, Rene Hussong, Eva Lange,  Nico  Pfeifer,
       Ole  Schulz-Trieglaff,  Alexandra  Zerck,  Knut  Reinert, and Oliver Kohlbacher (2008)  OpenMS – an Open-
       Source Software Framework for Mass Spectrometry.  BMC Bioinformatics, 9:163. doi:10.1186/1471-2105-9-163.


SEE ALSO
       libopenms(3), topp(1), openms(7), openms-doc(7).

       The program is documented fully in the Tutorials, that are packaged in openms-doc.


AUTHOR
       This manual page was written by Filippo Rusconi <lopippo@debian.org>.  Permission  is  granted  to  copy,
       distribute  and/or  modify  this  document  under the terms of the GNU General Public License, Version 3,
       published by the Free Software Foundation.

        On a Debian system the complete text of the GNU General Public License version 3 can  be  found  in  the
       file `/usr/share/common-licenses/GPL-3'.

                                                  November 2012                                 OPENMS-COMMON(7)